View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_high_2 (Length: 575)
Name: NF19307_high_2
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 14 - 553
Target Start/End: Complemental strand, 26450483 - 26449944
Alignment:
| Q |
14 |
catcaccaacaccatgtttttccataatcaatttcttcacccaaccacacataatagcaaccattaactccatagtttccttatcaaccctgttctcttt |
113 |
Q |
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| T |
26450483 |
catcaccaacaccatgtttttccataatcaatttcttcacccaaccacacataatagcaaccattaactccatagtttccttatcaaccctgttctcttt |
26450384 |
T |
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| Q |
114 |
ccttaaccaatcaaaaacctctaaagcacaccatgaatctcttccatcttgagagaaataaaccaacacaagctgaagttctttagccgaaagacggtca |
213 |
Q |
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| T |
26450383 |
ccttaaccaatcaaaaacctccaaagcacaccatgaatctcttccatcttgagagaaataaaccaacacaagctgaagttctttagccgaaagacggtca |
26450284 |
T |
|
| Q |
214 |
ttcatctcttctagaacatcagatggttcccttgtcatcctctcaagctcttcaattgcttctaagaatccatctcccatttcttcttcctcctcttcgt |
313 |
Q |
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| T |
26450283 |
ttcatctcttctagaacatcagatggttctcttgtcatcctctcaagctcttcaattgcttctaagaatccatctcccatttcttcttcctcctcttcgt |
26450184 |
T |
|
| Q |
314 |
cgtcgctcgtcacgaattggtcaagttccactgaatttttcctcttaattgaagctggttttgctacaaataaagggtttttatatttgaatgacccatc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
26450183 |
cgtcgctcgtcacgaattggtcaagttccactgaatttttcctcttaattgaaattggtttagctacaaataaagggttttgatatttgaatgacccatc |
26450084 |
T |
|
| Q |
414 |
attgaatttgagtaaaaatccacactttgatgaaggataaaccaaagggtatctttgttttggtgaaatttgagatgaaaacacaaaacccattttcatt |
513 |
Q |
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| T |
26450083 |
attgaatttgagtaaaaatccacactttgatgaaggataaaccaaagggtatctttgttttggtgaaatttgagatgaaaacacaaaacccattttcatt |
26449984 |
T |
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| Q |
514 |
gctggagtaaacccatttgaataagccattttttctctct |
553 |
Q |
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| T |
26449983 |
gctggagtaaacccatttgcataagccattttttctctct |
26449944 |
T |
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