View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_high_20 (Length: 287)
Name: NF19307_high_20
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 49537910 - 49537645
Alignment:
| Q |
8 |
catcatcatgtttgtcctgatagaaaactgagtgaaaatttgaagagttcaaaagaaagctagatgaatttgagtccattggtataatataatgtcctat |
107 |
Q |
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| T |
49537910 |
catcatcatgtttgtcctgatagaaaactgagtgaaaatttgaagagttcaaaagaaagctagatgaatttgagtccattggtataatataatgtcctat |
49537811 |
T |
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| Q |
108 |
gaaaaagtttagtggtcaatggctatgagtttcatttgtaagacttgctcatttataatgaaatattttgagtatctaagtggaaattccaaaagcacat |
207 |
Q |
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| T |
49537810 |
gaaaaagtttagtggtcaatggctatgagtttcatttgtaagacttgctcatttataatgaaatattttgagtatctaagtggaaattccaaaagcacat |
49537711 |
T |
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| Q |
208 |
ggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtc |
273 |
Q |
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| T |
49537710 |
ggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtc |
49537645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 49553051 - 49552966
Alignment:
| Q |
188 |
tggaaattccaaaagcacatggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtc |
273 |
Q |
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| T |
49553051 |
tggaaattccaaaggcacgtggaagacaagaaaacctactccattatcaatcattgaatgcataaagcttatcttctgttactgtc |
49552966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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