View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_high_26 (Length: 252)
Name: NF19307_high_26
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 3464451 - 3464673
Alignment:
| Q |
21 |
gtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcagaggatcccccttccga |
120 |
Q |
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| T |
3464451 |
gtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcagaggatcccccttccga |
3464550 |
T |
|
| Q |
121 |
tatggtcattgtttgcttgggtgctacgattagagtcacaatcgttccaccaagccatcttcatcacagtctcatccattattttaattaacgtcaccac |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3464551 |
tatggtcattgtttgcttgggtgctacgattagagtcacaatcattccacgaagccatcttcatcacagtctcatccattattttaattaacgtcaccac |
3464650 |
T |
|
| Q |
221 |
ttagctctcatcttaatattctt |
243 |
Q |
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|||||| |||||||||| ||||| |
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| T |
3464651 |
ttagctttcatcttaattttctt |
3464673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 3454124 - 3454222
Alignment:
| Q |
21 |
gtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgatta----actgcttaaacccaccactaaccaagcagaggatccccct |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||| ||| |||||||||||| |
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| T |
3454124 |
gtcgaagtctttgcaaaggtgcaagcagtatcttttttcacaagaaacttagttaatgcattgcttaaacccaccaccaacttagcggaggatccccct |
3454222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 3454439 - 3454473
Alignment:
| Q |
136 |
cttgggtgctacgattagagtcacaatcgttccac |
170 |
Q |
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| T |
3454439 |
cttgggtgctacgattagagtcacaatcattccac |
3454473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 4039520 - 4039744
Alignment:
| Q |
21 |
gtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcagaggatcccccttccg- |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039520 |
gtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcagaggatcccccttccga |
4039619 |
T |
|
| Q |
120 |
-atatggtcattgtttgcttgggtgctacgattagagtcacaatcgttccaccaagccatcttcatcacagtctcatccattattttaattaacgtcacc |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039620 |
tatatggtcattgtttgcttgggtgctatgattagagtcacaatcattccacgaagccatcttcatcacagtctcatccattattttaattaacgtcacc |
4039719 |
T |
|
| Q |
219 |
acttagctctcatcttaatattctt |
243 |
Q |
| |
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| ||||||||| ||||||| ||||| |
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| T |
4039720 |
agttagctctcctcttaattttctt |
4039744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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