View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_high_28 (Length: 250)
Name: NF19307_high_28
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 36335888 - 36336114
Alignment:
| Q |
11 |
tattctccaagcccaaaacttttatattggtaatacacagccctaatctcataatagtgtgtgccactacattatctccaatctcacctatacgatgtac |
110 |
Q |
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| T |
36335888 |
tattctccaagcccaaaacttttatattggtaatacacagccctaatctcataatagtgtgtgccactacattatctccaatctcacctatacgatgtac |
36335987 |
T |
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| Q |
111 |
tgtattctgtatcttcattcctcacctttgaaatttaatccaatttctactagcaaaagatcaaagaataagagagaaataagaatgtttctactttcta |
210 |
Q |
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| T |
36335988 |
tgtattctgtatcttcattcctcacctttgaaatttaatccaatttctactagcaaaagatcaaagaataagagagaaataagaatgtttctactttcta |
36336087 |
T |
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| Q |
211 |
tttttatttctctactatcttcaaact |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36336088 |
tttttatttctctactatcttcaaact |
36336114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 28004709 - 28004761
Alignment:
| Q |
170 |
atcaaagaataagagagaaataagaatgtttctactttctatttttatttctc |
222 |
Q |
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||||||||||| | |||||||| |||||||||||||| |||||| ||||||| |
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| T |
28004709 |
atcaaagaatatgcaagaaataacaatgtttctactttatattttcatttctc |
28004761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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