View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19307_high_35 (Length: 230)

Name: NF19307_high_35
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19307_high_35
NF19307_high_35
[»] chr7 (4 HSPs)
chr7 (141-214)||(37090788-37090861)
chr7 (141-214)||(37097155-37097228)
chr7 (1-69)||(37090927-37090995)
chr7 (1-58)||(37097314-37097371)
[»] chr1 (1 HSPs)
chr1 (146-214)||(23187366-23187434)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 37090861 - 37090788
Alignment:
Q  141 cagtgatggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37090861 cagtgatggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggt 37090788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 37097228 - 37097155
Alignment:
Q  141 cagtgatggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37097228 cagtgatggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggt 37097155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37090995 - 37090927
Alignment:
Q  1 ggagggtaatgatagtaagaaagtgaaggctaagacgaacaccaagatgtataagaagggttctttggg 69  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  37090995 ggagggtaatgatagtaagaaagtgaaggctaagatgaacaccaagatgaataagaagtgttctttggg 37090927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37097371 - 37097314
Alignment:
Q  1 ggagggtaatgatagtaagaaagtgaaggctaagacgaacaccaagatgtataagaag 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37097371 ggagggtaatgatagtaagaaagtgaaggctaagacgaacaccaagatgaataagaag 37097314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 23187434 - 23187366
Alignment:
Q  146 atggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggt 214  Q
    |||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||| || ||||||    
T  23187434 atggaaggttcgcggtgcagtcgagttaatggaagaggatggaggtgttgtcaacaaaccctagttggt 23187366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University