View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19307_high_8 (Length: 453)
Name: NF19307_high_8
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 104 - 436
Target Start/End: Original strand, 37510055 - 37510387
Alignment:
| Q |
104 |
aatttcaccatcttagcacatgtttttgcagggtgattgttaaaaatatattgccgtcttgcaaaaaccagtttgatttactaccagtacctaatgtccc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37510055 |
aatttcaccatcttagcacatgtttttgcagggtgattgttaaaaatatattgccgtcttgcaaaaaccagtttgatttactaccagtacctaatgtccc |
37510154 |
T |
|
| Q |
204 |
cactccacagtccagttaagacagggacaaattgagcaggccattgcaaaaaacaaaacgtaacatggtagcaacaatacatgtccccaattaggtgaat |
303 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37510155 |
cactccacagtccagttaagacagtgacaaattgagcaggccattgcaaaaaacaaaacgttacatggtagcaacaatacatgtccccaattaggtgaat |
37510254 |
T |
|
| Q |
304 |
ccatccagctactaaaaacatttctttgttctttcttttaattttaaaatcatgaaactacattttttagtgtagcaaaattgggttctctaatttccta |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37510255 |
ccatccagctactaaaaacatttctttgttctttcttttaattttaaaatcatgaaactacattttttagtgtagcaaaattgggttctctaatttccta |
37510354 |
T |
|
| Q |
404 |
accattttattcattggatccttcacccattaa |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
37510355 |
accattttattcattggatccttcacccattaa |
37510387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 37509995 - 37510054
Alignment:
| Q |
16 |
atcgatgcaaatttcattattcaatcaaagaggacgatcgattgacttcatccaatgcat |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37509995 |
atcgatgcaaatttcattattcaatcaaagaggacgatcgattgacttcatccaatgcat |
37510054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University