View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19307_low_1 (Length: 731)

Name: NF19307_low_1
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19307_low_1
NF19307_low_1
[»] chr3 (1 HSPs)
chr3 (11-709)||(26449944-26450642)


Alignment Details
Target: chr3 (Bit Score: 667; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 11 - 709
Target Start/End: Complemental strand, 26450642 - 26449944
Alignment:
Q  11 catcatcattacaagcaatcccacgtctcaaaacctcttgcacaaacaaacaagcaccatctttctcccccatatcccaatacaaagaaataaccttctc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26450642 catcctcattacaagcaatcccacgtctcaaaacctcttgcacaaacaaacaagcaccatctttctcccccatatcccaatacaaagaaataaccttctc 26450543  T
Q  111 aatcatactgaaaccaggtctcaaaccaacacaatccatatcaacaagaagatcaacaacatcaccaacaccatgtttttccataatcaatttcttcacc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26450542 aatcatactgaaaccaggtctcaaaccaacacaatccatatcaacaagaagatcaacaacatcaccaacaccatgtttttccataatcaatttcttcacc 26450443  T
Q  211 caaccacacataatagcaaccattaactccatagtttccttatcaaccctgttctctttccttaaccaatcaaaaacctctaaagcacaccatgaatctc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26450442 caaccacacataatagcaaccattaactccatagtttccttatcaaccctgttctctttccttaaccaatcaaaaacctccaaagcacaccatgaatctc 26450343  T
Q  311 ttccatcttgagagaaataaaccaacacaagctgaagttctttagccgaaagacggtcattcatctcttctagaacatcagatggttcccttgtcatcct 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26450342 ttccatcttgagagaaataaaccaacacaagctgaagttctttagccgaaagacggtcattcatctcttctagaacatcagatggttctcttgtcatcct 26450243  T
Q  411 ctcaagctcttcaattgcttctaagaatccatctcccatttcttcttcctcctcttcgtcgtcgctcgtcacgaattggtcaagttccactgaatttttc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26450242 ctcaagctcttcaattgcttctaagaatccatctcccatttcttcttcctcctcttcgtcgtcgctcgtcacgaattggtcaagttccactgaatttttc 26450143  T
Q  511 ctcttaattgaagctggttttgctacaaataaagggtttttatatttgaatgacccatcattgaatttgagtaaaaatccacactttgatgaaggataaa 610  Q
    ||||||||||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26450142 ctcttaattgaaattggtttagctacaaataaagggttttgatatttgaatgacccatcattgaatttgagtaaaaatccacactttgatgaaggataaa 26450043  T
Q  611 ccaaagggtatctttgttttggtgaaatttgagatgaaaacacaaaacccattttcattgctggagtaaacccatttgaataagccattttttctctct 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26450042 ccaaagggtatctttgttttggtgaaatttgagatgaaaacacaaaacccattttcattgctggagtaaacccatttgcataagccattttttctctct 26449944  T

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