View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19307_low_10 (Length: 439)
Name: NF19307_low_10
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 50445078 - 50445485
Alignment:
| Q |
1 |
ttcatgactaattttggctttaatcaccaaagatatatcacaaagaggtttggcatgccaagttttgacaataaaatcttggcatttccgaaaattaagc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
50445078 |
ttcatgaataattttggctttaatcaccaaagatatatcaca--gaggtttggcatgccaagttttgacaataaaatcttggcgtttccgaaaattgagc |
50445175 |
T |
|
| Q |
101 |
ttgatgggggagttcatgcatatacacaccacacttaatcatgattttagttcttcccttaccagttttgaagaagactgttttaattgcatgcccaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50445176 |
ttgatgggggagttcatgcatatacacaccacacttaatcatgattttagttcttcccttaccagttttgaagaagactgttttaattgcatgcccaacc |
50445275 |
T |
|
| Q |
201 |
taatgcattcttcatgcaagtataacatcatcgctgtgttctttttctatctagtcattcatcttgtttgagtcttctatcaacattctgcataatgaga |
300 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50445276 |
taatgcgttcttcatgcaagtataatatcatcgctgtgttctttttctatctagccattcatcttatttgagtcttctatcaacattctgcataatgaga |
50445375 |
T |
|
| Q |
301 |
aacaatcatgtatcttccactcaaagacaaacattgaaagacaattttatcgaatttgtggaaactcagattgttgagcattttattcttatgtagtcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50445376 |
aacaatcatgtatcttccactcaaagacaaacattgaaagacaattttatggaatttgtggaaactcagattgttgagcattttattcttatgtagtcca |
50445475 |
T |
|
| Q |
401 |
atctttagga |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
50445476 |
atctttagga |
50445485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 48395790 - 48395982
Alignment:
| Q |
1 |
ttcatgactaattttggcttt-aatcaccaaagatatatcacaaagaggtttggcatgccaagttttgacaataaaatcttggcatttccgaaaattaag |
99 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| || |
|
|
| T |
48395790 |
ttcatgactaattttgggttttaatcaccagagatatctcacaaagaggtttggcatgccaagttctgacaataaggtcttggcattttcggaaattgag |
48395889 |
T |
|
| Q |
100 |
cttgatgggggagttcatgcatatacacaccacacttaatcatgattttagttcttcccttaccagttttgaagaagactgttttaattgcatgcc |
195 |
Q |
| |
|
|||||||||||||||||| || || || ||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48395890 |
cttgatgggggagttcatccacatgca---cacacttaatcttgatttcagttcttaccttaccagtttcgaagaagactgttttaattgcatgcc |
48395982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University