View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_low_11 (Length: 419)
Name: NF19307_low_11
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 24861028 - 24861333
Alignment:
| Q |
35 |
ttgtttggttgaaaataatttttggttttgaggggttgaagcgattatttgcagagaacgcgcgaaaatggataaatatttggttcctaaaaagcatttg |
134 |
Q |
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| T |
24861028 |
ttgtttggttgaaaattatttttggttttgaggggtttaagcgattattttcagagaaagcgcgaaaatggataaatatttggttcctaaaaagcatttg |
24861127 |
T |
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| Q |
135 |
aaagaaagggttaagcttcttcataggtataattagtttaaaagttatttatttaagtgatttttgtaaatgagtatttgtgtttagatttgtgtgtgtt |
234 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
24861128 |
aaagaaagggttaagcttcttcataggtaaaattagtttaaaagttatttatttaagtgatttttgtaattgagtattagtgtttagatttgtgtgtgtt |
24861227 |
T |
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| Q |
235 |
gcaattgaaggtttcgttggaagagaagtttagttcaactgaatgggaaatttgagccgaattttcgacatgaaatgatgaacttgcttatgggttctta |
334 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24861228 |
gcaattgaaggtttcgttggaagagaagtttagttgaactgaatgggaaatttgagccgaattttcgacatgaaatgatgaacttgcttatgggttctta |
24861327 |
T |
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| Q |
335 |
ttctga |
340 |
Q |
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|||||| |
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| T |
24861328 |
ttctga |
24861333 |
T |
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