View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_low_13 (Length: 384)
Name: NF19307_low_13
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 22 - 371
Target Start/End: Original strand, 7007141 - 7007490
Alignment:
| Q |
22 |
gtgaatgcggagaatttctgacttcaaataatccgaattcgtgtttcgagtgatgaagtttgtagggttgatgtgttaatttgttttgtgttatatagaa |
121 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7007141 |
gtgaatgcggagaatttctgacttcagataatccgaatttgtgtttcgagtgatgaagtttgtagggttgatgtgttaatttgttttgtgttatatagaa |
7007240 |
T |
|
| Q |
122 |
aggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattcttct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7007241 |
aggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattcttct |
7007340 |
T |
|
| Q |
222 |
caagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7007341 |
caagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtt |
7007440 |
T |
|
| Q |
322 |
tcattgctcacacaccagcaacctactaagtttgatatttgcaccaccct |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7007441 |
tcattgctcacacaccagcaacctactaagtttgatatttgcaccaccct |
7007490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 23 - 371
Target Start/End: Original strand, 7010210 - 7010568
Alignment:
| Q |
23 |
tgaatgcggagaatttctgacttcaaataatccgaattcgtgtttcgagtgatgaagtttgtagggttgatgtgttaatttgtt----------ttgtgt |
112 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||| || ||||| | || |||||| |||||| |||||||||||||||||||| |||||| |
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|
| T |
7010210 |
tgaatgcggagaatttctgactgcaaacaatccgattttgtgttacaagcgatgaattttgtacggttgatgtgttaatttgttgtttgaattgttgtgt |
7010309 |
T |
|
| Q |
113 |
tatatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccacc |
212 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
7010310 |
tttatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccact |
7010409 |
T |
|
| Q |
213 |
gattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7010410 |
gattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagt |
7010509 |
T |
|
| Q |
313 |
gcattagtttcattgctcacacaccagcaacctactaagtttgatatttgcaccaccct |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7010510 |
gcattagtttcattgctcacacaccagcaacctactaagtttgatatatgcaccaccct |
7010568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 118 - 337
Target Start/End: Original strand, 1358572 - 1358791
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
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|
| T |
1358572 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1358671 |
T |
|
| Q |
218 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
1358672 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1358771 |
T |
|
| Q |
318 |
agtttcattgctcacacacc |
337 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
1358772 |
agtttcattgcacacacacc |
1358791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 118 - 337
Target Start/End: Original strand, 1374124 - 1374343
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
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|
| T |
1374124 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1374223 |
T |
|
| Q |
218 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
1374224 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1374323 |
T |
|
| Q |
318 |
agtttcattgctcacacacc |
337 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
1374324 |
agtttcattgcacacacacc |
1374343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 118 - 337
Target Start/End: Original strand, 1394671 - 1394890
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
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|
| T |
1394671 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1394770 |
T |
|
| Q |
218 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
1394771 |
ttctcaagtgttgaaggagcttgatgaagttgttgatgcttaccctaatgcctttgtccgtatcatcggattcgacaaagttcgtcaagttcaatgcatc |
1394870 |
T |
|
| Q |
318 |
agtttcattgctcacacacc |
337 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1394871 |
agtttcattgcacacacacc |
1394890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 118 - 337
Target Start/End: Original strand, 1350666 - 1350885
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
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|
| T |
1350666 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1350765 |
T |
|
| Q |
218 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
1350766 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1350865 |
T |
|
| Q |
318 |
agtttcattgctcacacacc |
337 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1350866 |
agtttcattgcacacacacc |
1350885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 118 - 337
Target Start/End: Original strand, 1384320 - 1384539
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1384320 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1384419 |
T |
|
| Q |
218 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1384420 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1384519 |
T |
|
| Q |
318 |
agtttcattgctcacacacc |
337 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1384520 |
agtttcattgcacacacacc |
1384539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 118 - 337
Target Start/End: Original strand, 1390425 - 1390644
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1390425 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1390524 |
T |
|
| Q |
218 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1390525 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1390624 |
T |
|
| Q |
318 |
agtttcattgctcacacacc |
337 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1390625 |
agtttcattgcacacacacc |
1390644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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