View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19307_low_14 (Length: 367)
Name: NF19307_low_14
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_14 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 156 - 367
Target Start/End: Complemental strand, 8148134 - 8147923
Alignment:
| Q |
156 |
agctcatcttcctcctttgactattcttcttcaggtctcagttcagtaatgtccttcctatctttgtcctagacatgagggtgatctcatcccttcagaa |
255 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
8148134 |
agctcatcttcctccttttattattcttcttcaggtctctgttcagtaatgtcatttctatctttgtccttgacatgagggtgatcccatcccttcagaa |
8148035 |
T |
|
| Q |
256 |
cggctttccaagtcttgttatcattagacttgaggaatgtcatgatcatgcgtacttttcagttgtcatagttagatccatcaagaatgggtggtctatt |
355 |
Q |
| |
|
||| ||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8148034 |
cggtttttcaagtcttgttatcaatagacttgaggaatgccatgatcatgcgtacttttctgtagtcatagttagatccatccagaatgggtggtctatt |
8147935 |
T |
|
| Q |
356 |
gacttatcctcc |
367 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8147934 |
gacttatcctcc |
8147923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 8148274 - 8148168
Alignment:
| Q |
17 |
gtcttaataatcaaatgatcattgtacaaccagaaaatactaccaaannnnnnnngtacaaccagaattgaataatataacaccatataacattgtaagg |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||| |
|
|
| T |
8148274 |
gtcttaatagtcaaatgatcattgtacaaccagaaaatactaccaatttttttttgtacaaccagaattaaataatataacaccatataacatcgtcagg |
8148175 |
T |
|
| Q |
117 |
agcacac |
123 |
Q |
| |
|
||||||| |
|
|
| T |
8148174 |
agcacac |
8148168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 360
Target Start/End: Complemental strand, 20962558 - 20962440
Alignment:
| Q |
237 |
tgatctcatcccttcagaacggctttccaagtcttgttatcattagacttgaggaatgtcatgatcatgcgtacttttcagttgtcatagttagatccat |
336 |
Q |
| |
|
||||| |||||||| | |||||| |||||||||||| | ||| || |||||||||||| | |||||||||||||| || | ||| |||||||||||| |
|
|
| T |
20962558 |
tgatcacatcccttgataacggccttccaagtcttgatgtcaatacacttgaggaatg---ttatcatgcgtactttccaatagtc--agttagatccat |
20962464 |
T |
|
| Q |
337 |
caagaatgggtggtctattgactt |
360 |
Q |
| |
|
| | ||| | |||||||||||||| |
|
|
| T |
20962463 |
ccaaaatagatggtctattgactt |
20962440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 367
Target Start/End: Complemental strand, 15003876 - 15003727
Alignment:
| Q |
215 |
atctttgtcctagacatgagggtgatctcatcccttcagaacggctttccaagtcttgttatcattagacttgaggaatgtcatgatcatgcgtactttt |
314 |
Q |
| |
|
||||||||| | || | |||| ||||| |||||||| ||||| ||||||| |||| ||| ||| | |||||| | ||||| || ||||||| ||||| |
|
|
| T |
15003876 |
atctttgtctttgatacgaggatgatcccatcccttgagaacaactttccaggtctagttgtcaatggacttgtgaaatgt--tg-tcatgcgcactttc |
15003780 |
T |
|
| Q |
315 |
cagttgtcatagttagatccatcaagaatgggtggtctattgacttatcctcc |
367 |
Q |
| |
|
|||| ||| |||||||| ||||| | |||||||||||||||||||| |||||| |
|
|
| T |
15003779 |
cagtagtcgtagttagacccatccaaaatgggtggtctattgacttgtcctcc |
15003727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 28045370 - 28045330
Alignment:
| Q |
320 |
gtcatagttagatccatcaagaatgggtggtctattgactt |
360 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28045370 |
gtcatagttagatccatctagaatgggtggtctattgactt |
28045330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University