View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_low_17 (Length: 342)
Name: NF19307_low_17
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 505594 - 505269
Alignment:
| Q |
1 |
acaaatattacaattaagcctaattatttctagcttggtcttctagtttttctctctgaataatattagactaatatattttgttaatgatgtaatgcat |
100 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
505594 |
acaaatattacatttaagcctaattatttctagctcggtcttctagtttttctctctaaataatattagactaatatatgttgttaatgatgtaatgcat |
505495 |
T |
|
| Q |
101 |
gaaggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
505494 |
gaaggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttctctgttgcgtatttcttatgcccttca |
505395 |
T |
|
| Q |
201 |
aacgagaccatgattgagagttgcaaagagccctctgtataccgcaaattcagctttaaagaatatagacaacaagttcgtgatgatgttcagaagttag |
300 |
Q |
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|| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505394 |
aatgacaccatgattgagagttgcaaagagccctctatataccgcaaattcagctttaaagaatatagacaacaagttcgtgatgatgttcagaagttag |
505295 |
T |
|
| Q |
301 |
gttccaaaataggcctacctaggttt |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
505294 |
gttccaaaataggcctacctaggttt |
505269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 322
Target Start/End: Complemental strand, 16702318 - 16702099
Alignment:
| Q |
103 |
aggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttcaaa |
202 |
Q |
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| T |
16702318 |
aggcttggagtaatggactttacaagagtgttgagcatcgagttgttacaaatccaaaagttgaaaggttctctatggcgtatttcttgtgcccttcaaa |
16702219 |
T |
|
| Q |
203 |
cgagaccatgattgagagttgcaaagagccctctgtataccgcaaattcagctttaaagaatatagacaacaagttcgtgatgatgttcagaagttaggt |
302 |
Q |
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|||| |||| ||||| |||||| |||| ||| | ||| | || ||||| |||||||| | ||||||||||| ||||||||||||||||| || |
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| T |
16702218 |
tgagagtgtgatagagagctgcaaaaagccatctctttacaaagagtttagcttccaagaatatcggcaacaagttcgagatgatgttcagaagttgggg |
16702119 |
T |
|
| Q |
303 |
tccaaaataggcctacctag |
322 |
Q |
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||||||||||||||||||| |
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| T |
16702118 |
accaaaataggcctacctag |
16702099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 322
Target Start/End: Complemental strand, 17676554 - 17676335
Alignment:
| Q |
103 |
aggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttcaaa |
202 |
Q |
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|||||||||| |||||| | || ||||||||||||||||||||||| ||||| |||| ||| |||||||| ||| | ||||||||||| ||||||||||| |
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| T |
17676554 |
aggcttggagtaatggactttacaagagtgttgagcatcgagttgttacaaatccaaaagttgaaaggttctctatggcgtatttcttgtgcccttcaaa |
17676455 |
T |
|
| Q |
203 |
cgagaccatgattgagagttgcaaagagccctctgtataccgcaaattcagctttaaagaatatagacaacaagttcgtgatgatgttcagaagttaggt |
302 |
Q |
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|||| |||| ||||| |||||| |||| ||| | ||| | || ||||| |||||||| | ||||||||||| ||||||||||||||||| || |
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| T |
17676454 |
tgagagtgtgatagagagctgcaaaaagccatctctttacaaagagtttagcttccaagaatatcggcaacaagttcgagatgatgttcagaagttgggg |
17676355 |
T |
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| Q |
303 |
tccaaaataggcctacctag |
322 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
17676354 |
accaaaataggcctacctag |
17676335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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