View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_low_21 (Length: 326)
Name: NF19307_low_21
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 47110079 - 47109778
Alignment:
| Q |
9 |
agcagagaaaactataagtaattattggagtgagaaatattacaagcagttgttaattcatcaaaaaatgaagactaactaaccttgtattgatcacatt |
108 |
Q |
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| T |
47110079 |
agcagagaaaactataagtaattattggagtgagaaatattacaagcagttgttaattcatcaaaaaatgaagactaactaaccttgtattgatcacatt |
47109980 |
T |
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| Q |
109 |
taccatcaacgccacgatagggataatcctcatcgctgtcaataccaccattgtttataatgaactcaaaggcatattccataagtccgccatcgcaacc |
208 |
Q |
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| T |
47109979 |
taccatcaacgccacgatagggataatcctcatcgctgtcaataccaccattgtttataatgaactcaaaggcatattccataagtccgccatcgcaacc |
47109880 |
T |
|
| Q |
209 |
tgcattaactgttctatcacagtcaaccagttcttgttctgatagtgaaacaagttctcctgtgactatcttgttaatcccttccactgcagcaattgtt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47109879 |
tgcattaactgttctatcacagtcaaccagttcttgttctgatagtgaaacaagttctcctgtgactatcttgttaatcccttccactgcagcaattgtt |
47109780 |
T |
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| Q |
309 |
ga |
310 |
Q |
| |
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|| |
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| T |
47109779 |
ga |
47109778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 280
Target Start/End: Original strand, 5548556 - 5548690
Alignment:
| Q |
146 |
gtcaataccaccattgtttataatgaactcaaaggcatattccataagtccgccatcgcaacctgcattaactgttctatcacagtcaaccagttcttgt |
245 |
Q |
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| T |
5548556 |
gtcaatgccaccattactgatgatgaactcgaaggcgtaatccataagtccaccattgcatccttcgttgtatgatgtatcacagtccaccagttcttgt |
5548655 |
T |
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| Q |
246 |
tctgatagtgaaacaagttctcctgtgactatctt |
280 |
Q |
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| T |
5548656 |
tctgatagtgaaattagatctcctgtcacaatctt |
5548690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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