View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19307_low_22 (Length: 321)

Name: NF19307_low_22
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19307_low_22
NF19307_low_22
[»] chr8 (6 HSPs)
chr8 (1-317)||(1795336-1795652)
chr8 (3-296)||(5185356-5185654)
chr8 (3-296)||(6231867-6232166)
chr8 (55-100)||(5058903-5058948)
chr8 (56-103)||(5198196-5198243)
chr8 (4-53)||(21112654-21112703)
[»] chr7 (4 HSPs)
chr7 (3-296)||(5179046-5179344)
chr7 (3-53)||(22845044-22845094)
chr7 (5-53)||(42233252-42233300)
chr7 (4-53)||(21068983-21069032)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-53)||(184069-184119)
[»] chr6 (2 HSPs)
chr6 (3-53)||(18857796-18857846)
chr6 (3-53)||(30882566-30882616)
[»] chr5 (5 HSPs)
chr5 (3-53)||(3691234-3691284)
chr5 (3-53)||(3875503-3875553)
chr5 (3-53)||(17870566-17870616)
chr5 (4-53)||(10026238-10026287)
chr5 (4-53)||(25541703-25541752)
[»] chr2 (3 HSPs)
chr2 (3-53)||(27510634-27510684)
chr2 (4-53)||(27193733-27193782)
chr2 (4-53)||(27843547-27843596)
[»] chr1 (3 HSPs)
chr1 (3-53)||(2330427-2330477)
chr1 (3-53)||(48774293-48774343)
chr1 (12-53)||(36208486-36208527)
[»] scaffold1139 (1 HSPs)
scaffold1139 (3-53)||(2275-2325)
[»] scaffold0356 (2 HSPs)
scaffold0356 (3-53)||(15958-16008)
scaffold0356 (3-53)||(16877-16927)
[»] chr4 (2 HSPs)
chr4 (3-53)||(14146459-14146509)
chr4 (4-53)||(55558033-55558082)
[»] chr3 (5 HSPs)
chr3 (3-53)||(11369899-11369949)
chr3 (4-53)||(10001668-10001717)
chr3 (4-53)||(27275656-27275705)
chr3 (4-53)||(10111860-10111909)
chr3 (4-53)||(10245545-10245594)
[»] scaffold0262 (1 HSPs)
scaffold0262 (4-53)||(20264-20313)
[»] scaffold0225 (1 HSPs)
scaffold0225 (4-53)||(13204-13253)
[»] scaffold0118 (2 HSPs)
scaffold0118 (4-53)||(27629-27678)
scaffold0118 (4-53)||(24437-24486)
[»] scaffold0029 (1 HSPs)
scaffold0029 (4-53)||(141174-141222)
[»] scaffold0002 (1 HSPs)
scaffold0002 (4-53)||(318641-318689)
[»] scaffold0017 (1 HSPs)
scaffold0017 (5-53)||(187804-187852)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 1795652 - 1795336
Alignment:
Q  1 acggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795652 acggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattg 1795553  T
Q  101 ataactagttaatgtgattcgcatttcgcttcttccaagcaaggaccttctgctgatttccatttcaccataacatttttggatataactcatctcacca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795552 ataactagttaatgtgattcgcatttcgcttcttccaagcaaggaccttctgctgatttccatttcaccataacatttttggatataactcatctcacca 1795453  T
Q  201 tgatgcaatgatccctttaagttgattttttctacaaaaactgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtcttttg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795452 tgatgcaatgatccctttaagttgattttttctacaaaaactgcatgaccttcatgtctacggggattactgccttgtaatgttttcaagctgtcttttg 1795353  T
Q  301 aacaagtattatctacc 317  Q
    |||||||||| ||||||    
T  1795352 aacaagtattttctacc 1795336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 5185356 - 5185654
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgat 102  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5185356 ggaaaatgctgaacggtatcgtagagttagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgat 5185455  T
Q  103 aactagttaatgtgattcgcatttcgcttcttccaagcaaggaccttc-tgctgatttccatttcaccataacatttttggatataactcatctc--ac- 198  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||  ||     
T  5185456 aactagttattgtgattcgcattttgcatcttccaagcaaggaccttcttgctgatttccattttaccataacatttttggatataactcatttccaact 5185555  T
Q  199 -catgatgcaatgatccctttaagttgattttttctacaaaaactgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtct 296  Q
     |   ||||| ||||||||||||||||||||||||||||||| ||||||||||||| | || | ||| ||| || ||||| ||||||||||||||||||    
T  5185556 tctcaatgcagtgatccctttaagttgattttttctacaaaagctgcatgatcttcgtatcaatgggcattgctaccttgcaatgttttcaagctgtct 5185654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 6231867 - 6232166
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactctta--gtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattg 100  Q
    |||||||  ||| ||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6231867 ggaaaattctgagcggtatcgtagagttagtagctcttatagtttgttctttattattggctttacttatttgtagttatttattatcttccaatgattg 6231966  T
Q  101 ataactagttaatgtgattcgcatttcgcttcttccaagcaaggaccttctgctgatttccatttcaccataacatttttggatataactcatctc--ac 198  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||    
T  6231967 ataactagttattgtgattcgcatttcgcatcttccaagcaaggaccttctgctgatttccatttcaccataacatttttggatataactcatttccaac 6232066  T
Q  199 --catgatgcaatgatccctttaagttgattttttctacaaaaactgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtct 296  Q
      |   ||||| ||||||||| ||||||||||||||||||||| ||||||||||||  | || | ||| ||| || ||||| ||||||||||||||||||    
T  6232067 ttctccatgcagtgatcccttcaagttgattttttctacaaaagctgcatgatctttgtatcaatgggcattgctaccttgcaatgttttcaagctgtct 6232166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 5058948 - 5058903
Alignment:
Q  55 tattggctttacttatttgtagttctttattatcttccaatgattg 100  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||    
T  5058948 tattagctatacttatttgtagttctttattatcttccaatgattg 5058903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 5198243 - 5198196
Alignment:
Q  56 attggctttacttatttgtagttctttattatcttccaatgattgata 103  Q
    ||||| ||| |||||||| |||||||||||||||||||||||| ||||    
T  5198243 attggatttgcttatttgcagttctttattatcttccaatgatcgata 5198196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 21112703 - 21112654
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||| ||||| |||||||||||||||| |||||||    
T  21112703 gaaaatgttgaatggtatcatagagttagtaactcttagttttttcttta 21112654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 7e-86; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 5179046 - 5179344
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgat 102  Q
    |||||||| ||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  5179046 ggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttctttattattggctttacttattagtcgttctttattatcttccaatgattgat 5179145  T
Q  103 aactagttaatgtgattcgcatttcgcttcttccaagcaaggaccttctgctgatttccatttcaccataacatttttggatataactcatctc--ac-- 198  Q
    ||||| ||| | |||||| |||||||| |||||||| ||||||||||||||||||||||||||   || |||||||||||||||||||||| ||  ||      
T  5179146 aactacttattatgattcacatttcgcatcttccaaacaaggaccttctgctgatttccattttgtcagaacatttttggatataactcatttccaactt 5179245  T
Q  199 catgatgcaatgatccctttaagttga-ttttttctacaaaaactgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtct 296  Q
    |   ||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |||| ||| |||||| ||||| ||||||||||||||||||    
T  5179246 ctccatgcaatgatccctttaagttgatttttttctacaaaagctgcatgatcttcgtatctatgggaattactaccttgcaatgttttcaagctgtct 5179344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 22845044 - 22845094
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| ||| |||||||| ||||||||||||||||||||||||    
T  22845044 ggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 22845094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 42233252 - 42233300
Alignment:
Q  5 aaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  42233252 aaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 42233300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 21069032 - 21068983
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| | |||||||||| |||||||||||||||| |||||||    
T  21069032 gaaaatgttgaatgatatcgtagagttagtaactcttagttttttcttta 21068983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 184069 - 184119
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  184069 ggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 184119  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 18857796 - 18857846
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  18857796 ggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 18857846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 30882566 - 30882616
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| ||| |||||||| ||||||||||||||||||||||||    
T  30882566 ggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 30882616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 3691234 - 3691284
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  3691234 ggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 3691284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 3875553 - 3875503
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  3875553 ggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 3875503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 17870616 - 17870566
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| ||| |||||||| ||||||||||||||||||||||||    
T  17870616 ggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 17870566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 10026238 - 10026287
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  10026238 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 10026287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 25541752 - 25541703
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  25541752 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 25541703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 27510634 - 27510684
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  27510634 ggaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27510684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 27193733 - 27193782
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  27193733 gaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27193782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 27843547 - 27843596
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  27843547 gaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27843596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 2330427 - 2330477
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  2330427 ggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 2330477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 48774343 - 48774293
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| | || |||||||||||| ||||||||||||||||||||||||    
T  48774343 ggaaaatgtttaatggtatcgtagagttagtaactcttagtttgttcttta 48774293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 36208486 - 36208527
Alignment:
Q  12 tgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  36208486 tgaacggtatcatagagttagtaactcttagtttgttcttta 36208527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 2275 - 2325
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| | |||||||||| ||||||||||||||||||||||||    
T  2275 ggaaaatgttgaatgatatcgtagagttagtaactcttagtttgttcttta 2325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 16008 - 15958
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| | || |||||||||||| ||||||||||||||||||||||||    
T  16008 ggaaaatgcttaatggtatcgtagagttagtaactcttagtttgttcttta 15958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 16927 - 16877
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| ||| |||||||| |||||||||||||||||| |||||    
T  16927 ggaaaatgctgaatggtgtcgtagagttagtaactcttagtttgtccttta 16877  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 14146509 - 14146459
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||    
T  14146509 ggaaaatgctgaatggtatcggagagttagtaactcttagtttgttcttta 14146459  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 55558082 - 55558033
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  55558082 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 55558033  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 11369899 - 11369949
Alignment:
Q  3 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||||| |||| |||||||| ||| ||||||||||||||||||||||||    
T  11369899 ggaaaatgctgaatggtatcgtggagttagtaactcttagtttgttcttta 11369949  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 10001668 - 10001717
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  10001668 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 10001717  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 27275656 - 27275705
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  27275656 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 27275705  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 10111860 - 10111909
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| || ||||||||||||| |||||||    
T  10111860 gaaaatgttgaatggtatcgtagagttattaactcttagttttttcttta 10111909  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 10245545 - 10245594
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||  |||||||||||||||| |||||||    
T  10245545 gaaaatgttgaatggtatcgtagatttagtaactcttagttttttcttta 10245594  T

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Target: scaffold0262 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 20264 - 20313
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  20264 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 20313  T

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Target: scaffold0225 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 13253 - 13204
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  13253 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 13204  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 27678 - 27629
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  27678 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 27629  T

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Target: scaffold0118; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 24486 - 24437
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| ||||| |||||| |||||||||||||||| |||||||    
T  24486 gaaaatgttgaatggtattgtagagttagtaactcttagttttttcttta 24437  T

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Target: scaffold0029 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 141222 - 141174
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| ||||||||||||| ||||||||||    
T  141222 gaaaatgttgaatggtatcgtagagttagtaactcttag-ttgttcttta 141174  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 318689 - 318641
Alignment:
Q  4 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    ||||||| |||| |||||||||||| ||||||||||||| ||||||||||    
T  318689 gaaaatgttgaatggtatcgtagagttagtaactcttag-ttgttcttta 318641  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 187804 - 187852
Alignment:
Q  5 aaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 53  Q
    |||||| |||| |||||||||||| ||| |||||||||||| |||||||    
T  187804 aaaatgttgaatggtatcgtagagttagcaactcttagttttttcttta 187852  T

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