View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_low_26 (Length: 260)
Name: NF19307_low_26
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 260
Target Start/End: Complemental strand, 8278194 - 8277964
Alignment:
| Q |
23 |
gatccattagtaaactatcattaacagtaatgattaatgaacaatttatggtttaatacatttattattgattgctatttatagcttagaatagcttttt |
122 |
Q |
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| T |
8278194 |
gatccattagtaaactatcattaacaataatga-------acaatttatggtttaatacatttattattgattgctatttatagcttagaatagcttttt |
8278102 |
T |
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| Q |
123 |
gtatcacattaatgatattttcaagtggaatttggtggataggttaagtaaaaaccattttaaactaaccaaagtttatgagaaaatagatttggcaatg |
222 |
Q |
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| T |
8278101 |
gtatcacattaatgatattttcaagtggattttggtggataggttaagtaaaaaccattttaaactaaccaaagtttatgagaaaatagatttggcaatg |
8278002 |
T |
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| Q |
223 |
aaatacctcaagcttttttgacctggcttctgctttag |
260 |
Q |
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| T |
8278001 |
aaatacctcaagcttttttgacctggcttctgctttag |
8277964 |
T |
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