View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_low_27 (Length: 259)
Name: NF19307_low_27
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 12835496 - 12835703
Alignment:
| Q |
12 |
tgtttcatacaaaagtgttcagaaagaatgagtttcataacgagttagtgcgaagtacctttaatattcaagagttcagaaactacaaaagtggcataaa |
111 |
Q |
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| T |
12835496 |
tgtttcatacaaaagtgttcagaaagaatgagtttcataacgagttagcgcgaagtacttctaatattcaagagttcagaaactacaaaagtggcgtaaa |
12835595 |
T |
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| Q |
112 |
tac---tttggaatactctaatcatccatagcnnnnnnnnnnnnntcaacttttccctttaatgttctccaaataaaatcataacacaaccaaaacgaac |
208 |
Q |
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| T |
12835596 |
tactaatttggaatactctaatcatccatagc------aaaaaaatcaacttttccctttaatgttctccaaataaaatcataacacaaccaaaacgaac |
12835689 |
T |
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| Q |
209 |
ggtctaaaaacaat |
222 |
Q |
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| T |
12835690 |
ggcctaaaaacaat |
12835703 |
T |
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