View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19307_low_3 (Length: 544)

Name: NF19307_low_3
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19307_low_3
NF19307_low_3
[»] chr6 (4 HSPs)
chr6 (20-534)||(26391694-26392205)
chr6 (292-404)||(24265501-24265613)
chr6 (332-398)||(4975741-4975807)
chr6 (356-404)||(6087171-6087219)
[»] chr5 (7 HSPs)
chr5 (169-534)||(21022807-21023170)
chr5 (278-395)||(3715743-3715860)
chr5 (297-398)||(7212307-7212408)
chr5 (321-411)||(34255222-34255312)
chr5 (332-397)||(40772685-40772750)
chr5 (277-398)||(26636820-26636941)
chr5 (362-398)||(731536-731572)
[»] chr8 (13 HSPs)
chr8 (272-398)||(34576121-34576244)
chr8 (296-398)||(34575358-34575458)
chr8 (277-403)||(19735717-19735843)
chr8 (297-395)||(33058613-33058711)
chr8 (323-404)||(32549698-32549779)
chr8 (332-398)||(4937532-4937598)
chr8 (304-398)||(32549734-32549828)
chr8 (325-395)||(33057809-33057878)
chr8 (350-395)||(29803259-29803304)
chr8 (339-387)||(20096752-20096800)
chr8 (345-393)||(30262705-30262753)
chr8 (330-382)||(33058014-33058066)
chr8 (324-368)||(33058620-33058664)
[»] chr3 (7 HSPs)
chr3 (312-404)||(30672515-30672607)
chr3 (333-395)||(31329505-31329567)
chr3 (323-393)||(2312978-2313048)
chr3 (297-399)||(4980840-4980942)
chr3 (337-411)||(11534826-11534900)
chr3 (332-401)||(33700192-33700261)
chr3 (297-398)||(43132595-43132695)
[»] chr1 (3 HSPs)
chr1 (297-385)||(39724715-39724803)
chr1 (304-375)||(12018457-12018528)
chr1 (331-376)||(47419976-47420021)
[»] chr7 (9 HSPs)
chr7 (323-397)||(46120633-46120707)
chr7 (304-404)||(29235815-29235915)
chr7 (277-368)||(27045857-27045948)
chr7 (292-397)||(4047930-4048035)
chr7 (345-398)||(6622569-6622622)
chr7 (357-398)||(30865031-30865072)
chr7 (337-398)||(35310143-35310204)
chr7 (332-368)||(5250812-5250848)
chr7 (333-405)||(42291517-42291589)
[»] chr2 (9 HSPs)
chr2 (313-395)||(11532946-11533028)
chr2 (345-398)||(15577642-15577695)
chr2 (293-395)||(24762455-24762555)
chr2 (357-395)||(8393702-8393740)
chr2 (357-395)||(36847249-36847287)
chr2 (357-395)||(44462200-44462238)
chr2 (280-361)||(41190860-41190941)
chr2 (272-360)||(18788483-18788571)
chr2 (366-398)||(36554250-36554282)
[»] chr4 (7 HSPs)
chr4 (274-398)||(5801830-5801953)
chr4 (344-398)||(44550133-44550187)
chr4 (279-392)||(24235588-24235701)
chr4 (330-395)||(53093327-53093392)
chr4 (344-411)||(30206550-30206618)
chr4 (351-399)||(30274673-30274721)
chr4 (304-395)||(32692704-32692793)


Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 20 - 534
Target Start/End: Complemental strand, 26392205 - 26391694
Alignment:
Q  20 ctacctcgttcatttcatcgaaaattatatcaaaatgttgattaaaatcttcttcatcttgttgaattgtgagagacatgcatgtgtttaacgtgaatca 119  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26392205 ctaccacgttcatgtcatcgaaaattatatcaaaatgttgattaaaatcttcttcatcttgttgaattgtgagagacatgcatgtgtttaacgtgaatca 26392106  T
Q  120 cgctttgaaccgtatatattctatttcttcaatgcacaagtctatgaagtctttgtgctgtgattcacactaccaacccagacacttaccacatcacatt 219  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  26392105 cgctttgaaccgtata-attctatttcttcaatgcacaagtctatgaagtctttgtgctgtga--cacactaccaacccagacacttaccacatcacatt 26392009  T
Q  220 aaacaaatgcagtcatatgacaattctaacactt-gatgcatacttcatccttatcatatttataagcaaatattttcttttcacattcatttaataagt 318  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26392008 aaacaaatgcagtcatatgacaattc-aacactttgatgcatacttcatcct-atcatatttataagcaaatattttcttttcacattcatttaataagt 26391911  T
Q  319 gttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaa-gtaaaatttgtttataaatgtggccggaagaagtacatatt 417  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||||| ||||||||    
T  26391910 gttatatttggactatatcatagttcagatacatcaactattcaatgaatctaaaaaaagtaaaatttacttataaatgtggccggaagaaatacatatt 26391811  T
Q  418 tgtaggataattctaacatgtatgatacccactgcaccaaatatttggcgaggaatgtaacactatactccaacggaggtggtcattaacattctcatat 517  Q
    ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26391810 tgtgggataattctaacttgtatgatacccactgctccaaatatttggcgaggaatgtaacactatactccaacggaggtggtcattaacattctcatat 26391711  T
Q  518 gctcactcaactcccct 534  Q
    |||||||||||||||||    
T  26391710 gctcactcaactcccct 26391694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 24265501 - 24265613
Alignment:
Q  292 ttttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttat 391  Q
    |||| |||||| ||||||| ||||| || | ||| |||| ||||||||| |||||||||||||| |||| ||| ||| |||||||| |||| ||| ||||    
T  24265501 tttttttttcagattcattaaataactgatgtatatggactatattataattcagatacatcaattatttaataaatctaaaaaagaaaaagttgcttat 24265600  T
Q  392 aaatgtggccgga 404  Q
    |||| || |||||    
T  24265601 aaatctgaccgga 24265613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 4975741 - 4975807
Alignment:
Q  332 tatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtg 398  Q
    |||| |||| ||||||||||| |  | || |||||| |||||||| |||||||||||||||||||||    
T  4975741 tataatatatttcagatacattagttgtttaatgaacttaaaaaattaaaatttgtttataaatgtg 4975807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 6087219 - 6087171
Alignment:
Q  356 ctattcaatgaatttaaaaaagtaaaatttgtttataaatgtggccgga 404  Q
    ||||||||||||| |||||||| || | ||||||||||||||| |||||    
T  6087219 ctattcaatgaatctaaaaaagaaatagttgtttataaatgtgaccgga 6087171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 169 - 534
Target Start/End: Original strand, 21022807 - 21023170
Alignment:
Q  169 tctttgtgctgtgattcacactaccaacccagacacttaccacatcacattaaacaaatgcagtcatatgacaattctaacacttgatgcatacttcatc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21022807 tctttgtgctgtgattcacactaccaacccagacacttaccacatcacattaaacaaatgcagtcatatgacaattc-aacacttgatgcatacttcatc 21022905  T
Q  269 cttatcatatttataagcaaatattttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaat 368  Q
    || |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  21022906 ct-atcaaatttataagcaaatattttcttttcacattcatttaataattgttatatctggactatatcatagttcaaatacatcaactattcaatgaat 21023004  T
Q  369 ttaaaaaagtaaaatttgtttataaatgtggccggaagaagtacatatttgtaggataattctaacatgtatgatacccactgcaccaaatatttggcga 468  Q
     ||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||    
T  21023005 ctaaaaaaataaaatttgcttataaatgtggccggaagaaatacatatttgtgggataattctaacatgtatgata-ccactgctccaaatatttgacga 21023103  T
Q  469 ggaatgtaacactatactccaacggaggtggtcattaacattctcatatgctcact-caactcccct 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21023104 ggaatgtaacactatactccaacggaggtggtcattaacattctcatatgctcactccaactcccct 21023170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 395
Target Start/End: Original strand, 3715743 - 3715860
Alignment:
Q  278 tttataagcaaatattttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaag 377  Q
    ||||||||||||||||   |||||||||||||| || || |||| ||| ||||||||||||||||| |||||||||||||||| ||| ||| ||||||||    
T  3715743 tttataagcaaatattcctttttcacattcattaaacaattgttgtatatggattatattatagttgagatacatcaactattgaataaatctaaaaaag 3715842  T
Q  378 taaaatttgtttataaat 395  Q
    ||||||||| ||||||||    
T  3715843 taaaatttgcttataaat 3715860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 398
Target Start/End: Original strand, 7212307 - 7212408
Alignment:
Q  297 ttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatg 396  Q
    |||||| ||||||| |||||||| | ||||| |||||||||||  || ||||||||||| |||| ||||||| ||||||| ||||| |||||||||||||    
T  7212307 ttttcagattcattaaataagtgatgtatctagattatattatgttttagatacatcaattatttaatgaatctaaaaaaataaaagttgtttataaatg 7212406  T
Q  397 tg 398  Q
    ||    
T  7212407 tg 7212408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 411
Target Start/End: Original strand, 34255222 - 34255312
Alignment:
Q  321 tatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtggccggaagaagta 411  Q
    |||||||||| |||| ||||||  ||||||||||  |||| ||||||| ||||||||||||| ||| ||||||||||| ||||| ||||||    
T  34255222 tatatctggaatataatatagtctagatacatcacttatttaatgaatctaaaaaagtaaaagttgcttataaatgtgaccggaggaagta 34255312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 397
Target Start/End: Complemental strand, 40772750 - 40772685
Alignment:
Q  332 tatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgt 397  Q
    |||||||| ||||||||||||||  |||| |||||||||||||||  |||||||  ||||||||||    
T  40772750 tatattattgttcagatacatcacttatttaatgaatttaaaaaaaaaaaatttaattataaatgt 40772685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 398
Target Start/End: Complemental strand, 26636941 - 26636820
Alignment:
Q  277 atttataagcaaatattttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaa 376  Q
    |||||||||||| | || | || ||| ||| ||| |||||||| | |||||  | ||||||||  || ||||||||||  |||| ||||||| | |||||    
T  26636941 atttataagcaacttttgttttgtcagatttattaaataagtgatgtatctaaactatattatgttttagatacatcatttatttaatgaatctgaaaaa 26636842  T
Q  377 gtaaaatttgtttataaatgtg 398  Q
    |||||| ||| |||||||||||    
T  26636841 gtaaaagttgcttataaatgtg 26636820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 731536 - 731572
Alignment:
Q  362 aatgaatttaaaaaagtaaaatttgtttataaatgtg 398  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  731536 aatgaatttgaaaaagtaaaagttgtttataaatgtg 731572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 398
Target Start/End: Original strand, 34576121 - 34576244
Alignment:
Q  272 atcatatttataagcaaatattttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaattta 371  Q
    |||| ||||||||| |||| ||| ||||||||||||||| ||||| |||| ||| |||| ||||||||||||||||||||| || |||||||| |||||     
T  34576121 atcacatttataagtaaat-tttccttttcacattcattaaataattgtt-tatttggactatattatagttcagatacataaa-tattcaataaatttg 34576217  T
Q  372 aaaaagtaaaatttgtttataaatgtg 398  Q
    |||| |||||||||| |||||||||||    
T  34576218 aaaaggtaaaatttgcttataaatgtg 34576244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 34575358 - 34575458
Alignment:
Q  296 cttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    ||||||||||||||| ||||| |||| ||| |||| ||||||||||||||||||||| || |||||||| ||||| |||| |||||||||  ||||||||    
T  34575358 cttttcacattcattaaataattgtt-tatttggactatattatagttcagatacat-aaatattcaataaatttgaaaaggtaaaattttcttataaat 34575455  T
Q  396 gtg 398  Q
    |||    
T  34575456 gtg 34575458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 403
Target Start/End: Complemental strand, 19735843 - 19735717
Alignment:
Q  277 atttataagcaaatattttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaa 376  Q
    |||||||||||| | ||  ||||||| ||||||| |||||||| | ||||  || |||| || | | |||||||||||| | || ||||||| |||||||    
T  19735843 atttataagcaacttttaccttttcatattcattaaataagtgatgtatcaagactatagtacattccagatacatcaattgtttaatgaatctaaaaaa 19735744  T
Q  377 gtaaaatttgtttataaatgtggccgg 403  Q
    | |||| ||| ||||||||||| ||||    
T  19735743 gcaaaagttgcttataaatgtgaccgg 19735717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 395
Target Start/End: Original strand, 33058613 - 33058711
Alignment:
Q  297 ttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    |||||| ||||||| ||||| || | |||||| | ||||||||| ||||||| |||||| |||| ||| ||| |||||||  |||| ||||||||||||    
T  33058613 ttttcagattcattaaataattgatgtatctgaactatattataattcagatgcatcaattatttaataaatctaaaaaaacaaaagttgtttataaat 33058711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 404
Target Start/End: Complemental strand, 32549779 - 32549698
Alignment:
Q  323 tatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtggccgga 404  Q
    |||||||| ||||||||| | |||||||||||  |||| ||||||| |||||||| |||| |||  |||||||||| |||||    
T  32549779 tatctggactatattatattccagatacatcagttatttaatgaatctaaaaaagcaaaagttgcgtataaatgtgaccgga 32549698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 4937598 - 4937532
Alignment:
Q  332 tatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtg 398  Q
    |||| ||||||| | |||||| || |||| ||||||| |||||||||| |||||| |||||||||||    
T  4937598 tataatatagtttatatacataaattatttaatgaatctaaaaaagtacaatttgcttataaatgtg 4937532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 32549734 - 32549828
Alignment:
Q  304 attcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtg 398  Q
    ||||||| ||||| || | |||||||| |||| |||||| ||||||||||   |||| ||||||| | |||||| |||| ||| |||||||||||    
T  32549734 attcattaaataactgatgtatctggaatataatatagtccagatacatcgtttatttaatgaatctcaaaaagcaaaagttgcttataaatgtg 32549828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 33057809 - 33057878
Alignment:
Q  325 tctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    |||||||||||||||| ||||||| |||||| |||| ||| ||| |||||||  |||| ||||||||||||    
T  33057809 tctggattatattataattcagatgcatcaattatttaataaatctaaaaaa-caaaagttgtttataaat 33057878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 29803304 - 29803259
Alignment:
Q  350 catcaactattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    |||||| |||| ||||||| ||||||||||||| ||||||||||||    
T  29803304 catcaattatttaatgaatataaaaaagtaaaagttgtttataaat 29803259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 20096800 - 20096752
Alignment:
Q  339 tagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgt 387  Q
    ||||||||||||||||  |||| ||||||||| ||||||||||| ||||    
T  20096800 tagttcagatacatcagttatttaatgaatttgaaaaagtaaaaattgt 20096752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 30262705 - 30262753
Alignment:
Q  345 agatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataa 393  Q
    |||||||| || |||| ||| |||||||||| |||||||||||||||||    
T  30262705 agatacattaattatttaataaatttaaaaaggtaaaatttgtttataa 30262753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 33058066 - 33058014
Alignment:
Q  330 attatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaa 382  Q
    |||||| |||||| |||||||||||| |||| ||||||| | |||||||||||    
T  33058066 attataatatagtccagatacatcaattatttaatgaatatgaaaaagtaaaa 33058014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 33058664 - 33058620
Alignment:
Q  324 atctggattatattatagttcagatacatcaactattcaatgaat 368  Q
    ||||| |||||| ||||||||||||||||||| |||| |||||||    
T  33058664 atctgaattataatatagttcagatacatcaattatttaatgaat 33058620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 312 - 404
Target Start/End: Complemental strand, 30672607 - 30672515
Alignment:
Q  312 aataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtggccgga 404  Q
    ||||| || ||||| |||| ||||||||| |||||||||||||| |||| ||||||| |||||| | |||||||| |||||||| || |||||    
T  30672607 aataactgatatatttggactatattataattcagatacatcaattatttaatgaatctaaaaatggaaaatttgcttataaatatgaccgga 30672515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 31329505 - 31329567
Alignment:
Q  333 atattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    |||||||| |||||||||||||||||||||| | || | |||||||||||||| |||||||||    
T  31329505 atattataattcagatacatcaactattcaacgtatctgaaaaagtaaaatttatttataaat 31329567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 2312978 - 2313048
Alignment:
Q  323 tatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataa 393  Q
    |||||||| |||||||||  ||||||||||||| |||||||||||||| |||||  || ||||| ||||||    
T  2312978 tatctggactatattatatatcagatacatcaattattcaatgaatttgaaaaatgaatatttgattataa 2313048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 399
Target Start/End: Original strand, 4980840 - 4980942
Alignment:
Q  297 ttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatg 396  Q
    |||||| ||| ||| ||||| || | ||||| || |||| || |||| |||||||| || |||| ||||||||| ||||||||||| ||||||||||| |    
T  4980840 ttttcagattaattgaataattgatgtatcttgactataataaagtttagatacataaattatttaatgaatttgaaaaagtaaaagttgtttataaacg 4980939  T
Q  397 tgg 399  Q
    |||    
T  4980940 tgg 4980942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 11534826 - 11534900
Alignment:
Q  337 tatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtggccggaagaagta 411  Q
    ||||| |||||||||| || |||||||||||| ||||||| |  | |||||||||||||| | || |||||||||    
T  11534826 tataggtcagatacattaaatattcaatgaatctaaaaaattgtattttgtttataaatgcgaccagaagaagta 11534900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 401
Target Start/End: Complemental strand, 33700261 - 33700192
Alignment:
Q  332 tatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtggcc 401  Q
    ||||||||| |||||||||||| | |||| ||||||| |||||||  |||| ||| ||||| ||||||||    
T  33700261 tatattatatttcagatacatccattatttaatgaatctaaaaaaacaaaaattgcttatacatgtggcc 33700192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 398
Target Start/End: Original strand, 43132595 - 43132695
Alignment:
Q  297 ttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatg 396  Q
    |||||| ||| ||| |||||||| | |||||| | ||||||||| |||||||| || |  |||| ||||||| ||||| | ||||| |||||||||||||    
T  43132595 ttttcagatttattaaataagtgatgtatctgaactatattataattcagatatattagttatttaatgaatctaaaaca-taaaagttgtttataaatg 43132693  T
Q  397 tg 398  Q
    ||    
T  43132694 tg 43132695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 39724715 - 39724803
Alignment:
Q  297 ttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaattt 385  Q
    |||||||||||||| ||||| |||| ||||| |  ||||||||||||||  ||||| ||  ||||||||||||| ||||||||||||||    
T  39724715 ttttcacattcattaaataattgttgtatctcggctatattatagttcaagtacataaataattcaatgaatttgaaaaagtaaaattt 39724803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 12018457 - 12018528
Alignment:
Q  304 attcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaa 375  Q
    ||||||| ||||| |||| ||||||   ||||||||| |||||||||||||| |||| ||||||| ||||||    
T  12018457 attcattaaataaatgttgtatctgagctatattatatttcagatacatcaattatttaatgaatctaaaaa 12018528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 47419976 - 47420021
Alignment:
Q  331 ttatattatagttcagatacatcaactattcaatgaatttaaaaaa 376  Q
    ||||||||||| ||| ||||||| | ||||||||||||||||||||    
T  47419976 ttatattatagatcatatacatcgattattcaatgaatttaaaaaa 47420021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 46120633 - 46120707
Alignment:
Q  323 tatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgt 397  Q
    ||||||||||||||||||||  ||||||||||  |||||||||||| |||||||| || ||| | ||||||||||    
T  46120633 tatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaatgt 46120707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 29235915 - 29235815
Alignment:
Q  304 attcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtggccgg 403  Q
    ||||||| |||||||  ||||||| || ||||||||  || |||||||| |  |||| ||||||| ||||||||||||| || |||||||||||| ||||    
T  29235915 attcattaaataagtaatatatctagactatattatgttttagatacataacttatttaatgaatctaaaaaagtaaaaattatttataaatgtgaccgg 29235816  T
Q  404 a 404  Q
    |    
T  29235815 a 29235815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 27045857 - 27045948
Alignment:
Q  277 atttataagcaaatattttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaat 368  Q
    ||||||||| || |||| |||||||  ||||||||||||| || | ||||  ||| |||||||||||||||||||| |  ||||||||||||    
T  27045857 atttataagaaattattctcttttcggattcatttaataactgatgtatcaagataatattatagttcagatacataagttattcaatgaat 27045948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 397
Target Start/End: Original strand, 4047930 - 4048035
Alignment:
Q  292 ttttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttat 391  Q
    ||||||||||| ||| ||| ||||| || | ||| || | ||||||||| |||||||||||| | | || ||||||| | |||||| |||| ||||||||    
T  4047930 ttttcttttcatatttattaaataattgatgtatttgaactatattataattcagatacatctaatgtttaatgaatctgaaaaagaaaaaattgtttat 4048029  T
Q  392 aaatgt 397  Q
    ||||||    
T  4048030 aaatgt 4048035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 6622622 - 6622569
Alignment:
Q  345 agatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtg 398  Q
    ||||||||||| |||| | | ||| ||||||||||||| |||||||||||||||    
T  6622622 agatacatcaattatttattaaatctaaaaaagtaaaagttgtttataaatgtg 6622569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 30865031 - 30865072
Alignment:
Q  357 tattcaatgaatttaaaaaagtaaaatttgtttataaatgtg 398  Q
    |||| |||||| |||||||| |||||||||||||||||||||    
T  30865031 tatttaatgaagttaaaaaaataaaatttgtttataaatgtg 30865072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 35310204 - 35310143
Alignment:
Q  337 tatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtg 398  Q
    ||||||||| |||||| || |||| ||||||| || ||||||||| |||| |||||||||||    
T  35310204 tatagttcatatacataaattatttaatgaatctagaaaagtaaattttgcttataaatgtg 35310143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 5250812 - 5250848
Alignment:
Q  332 tatattatagttcagatacatcaactattcaatgaat 368  Q
    |||||||||| |||||||||| |||||||||||||||    
T  5250812 tatattataggtcagatacattaactattcaatgaat 5250848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 42291589 - 42291517
Alignment:
Q  333 atattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtggccggaa 405  Q
    |||||||| | |||||||| ||| | || ||| ||||| |||||| |||| ||||||||||||||| ||||||    
T  42291589 atattataatccagatacaccaattgtttaataaatttgaaaaagaaaaagttgtttataaatgtgaccggaa 42291517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 11532946 - 11533028
Alignment:
Q  313 ataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    ||||||| | |||||| ||||||||||| |||||||||||||| ||||  |||||| ||||||| ||||| ||| ||||||||    
T  11532946 ataagtgatgtatctgtattatattatatttcagatacatcaattattttatgaatctaaaaaaataaaaattgcttataaat 11533028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 15577642 - 15577695
Alignment:
Q  345 agatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtg 398  Q
    ||||||||||  |||| ||||||||||||||||||||| |||||||||||||||    
T  15577642 agatacatcagttatttaatgaatttaaaaaagtaaaagttgtttataaatgtg 15577695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 24762455 - 24762555
Alignment:
Q  293 tttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttata 392  Q
    |||||||||| ||||||| |||||||| | |||||| ||||||||||| || ||||||||| | |||| | ||||  || |||| ||||| |||||||||    
T  24762455 tttcttttcagattcattaaataagtgatgtatctgaattatattatacttgagatacatcgattatttagtgaa--tacaaaaataaaaattgtttata 24762552  T
Q  393 aat 395  Q
    |||    
T  24762553 aat 24762555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 8393740 - 8393702
Alignment:
Q  357 tattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  8393740 tatttaatgaatttaaaaaagtaaaagttgtttataaat 8393702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 36847287 - 36847249
Alignment:
Q  357 tattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  36847287 tatttaatgaatttaaaaaagtaaaagttgtttataaat 36847249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 44462200 - 44462238
Alignment:
Q  357 tattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  44462200 tatttaatgaatttaaaaaagtaaaagttgtttataaat 44462238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 41190941 - 41190860
Alignment:
Q  280 tataagcaaatattttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattc 361  Q
    ||||| ||| ||||||||||| | ||| ||| ||||| || ||||| || | |||||||||||||| ||||||||| |||||    
T  41190941 tataaacaactattttctttttagatttattaaataactgatatatttgaactatattatagttcaaatacatcaattattc 41190860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 360
Target Start/End: Original strand, 18788483 - 18788571
Alignment:
Q  272 atcatatttataagcaaatattttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactatt 360  Q
    |||| ||||||||||||||||| | |||||| ||| ||   |||| || ||||||| || |||| |||||||| |||||||||| ||||    
T  18788483 atcacatttataagcaaatattattttttcatatttatagtataactgatatatctagactataatatagttccgatacatcaattatt 18788571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 36554282 - 36554250
Alignment:
Q  366 aatttaaaaaagtaaaatttgtttataaatgtg 398  Q
    ||||||||||||||||||||| |||||||||||    
T  36554282 aatttaaaaaagtaaaatttgcttataaatgtg 36554250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 5801953 - 5801830
Alignment:
Q  274 catatttataagcaaatattttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaa 373  Q
    |||||||||||||||||||| | |||||| ||||||||||||| || | | | | || |||| ||||||||| | ||||||| | || ||||||| | ||    
T  5801953 catatttataagcaaatattattttttcagattcatttaataattgatgt-tttagactatactatagttcataaacatcaattttttaatgaatatgaa 5801855  T
Q  374 aaagtaaaatttgtttataaatgtg 398  Q
    |||| || ||||  |||||||||||    
T  5801854 aaagaaatatttaattataaatgtg 5801830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 44550187 - 44550133
Alignment:
Q  344 cagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtg 398  Q
    |||||||||||  |||| |||||||||||||| |||||| ||||||| |||||||    
T  44550187 cagatacatcagttatttaatgaatttaaaaaggtaaaagttgtttaaaaatgtg 44550133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 392
Target Start/End: Original strand, 24235588 - 24235701
Alignment:
Q  279 ttataagcaaatattttcttttcacattcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagt 378  Q
    ||||||||||||||| | |||||| ||||||| ||||| || | ||| | || |||| || | | || |||||| |||| |||||||||| | ||||||     
T  24235588 ttataagcaaatattattttttcagattcattgaataactgatgtatttagactatactacaatccatatacatgaacttttcaatgaatcttaaaaaga 24235687  T
Q  379 aaaatttgtttata 392  Q
    || |||||||||||    
T  24235688 aatatttgtttata 24235701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 53093327 - 53093392
Alignment:
Q  330 attatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    |||||||| ||||||| |||||||| ||||||||||||| |  ||||  |||| ||||||||||||    
T  53093327 attatattgtagttcaaatacatcagctattcaatgaatctcgaaaaaaaaaaattgtttataaat 53093392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 411
Target Start/End: Original strand, 30206550 - 30206618
Alignment:
Q  344 cagatacatcaactattcaatgaat-ttaaaaaagtaaaatttgtttataaatgtggccggaagaagta 411  Q
    |||||||||||| |||||||||||| | ||||||| || ||||||||||||  ||| ||||||| ||||    
T  30206550 cagatacatcaattattcaatgaatctgaaaaaaggaatatttgtttataatagtgaccggaaggagta 30206618  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 30274673 - 30274721
Alignment:
Q  351 atcaactattcaatgaatttaaaaaagtaaaatttgtttataaatgtgg 399  Q
    ||||| |||||||||||| |||||||| |||| || |||||||||||||    
T  30274673 atcaaatattcaatgaatctaaaaaagcaaaagttatttataaatgtgg 30274721  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 32692704 - 32692793
Alignment:
Q  304 attcatttaataagtgttatatctggattatattatagttcagatacatcaactattcaatgaatttaaaaaagtaaaatttgtttataaat 395  Q
    ||||||| |||||||| | |||||| | ||||||||| || ||||||||| | |||| | |||||  |||||| ||||| ||||||||||||    
T  32692704 attcattaaataagtgatgtatctgaactatattatacttgagatacatcgattatttagtgaat--aaaaaaataaaaattgtttataaat 32692793  T

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