View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_low_37 (Length: 237)
Name: NF19307_low_37
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 51216388 - 51216594
Alignment:
| Q |
21 |
gaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagat |
120 |
Q |
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| T |
51216388 |
gaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagat |
51216487 |
T |
|
| Q |
121 |
tatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaagggtggcaccta |
220 |
Q |
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| T |
51216488 |
tatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaagggtggcaccta |
51216587 |
T |
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| Q |
221 |
tgcttct |
227 |
Q |
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||||||| |
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| T |
51216588 |
tgcttct |
51216594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 29933992 - 29933829
Alignment:
| Q |
30 |
agtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaa |
129 |
Q |
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||||| |||||||| ||||||||||||||||| |||||||||||||| | || | ||||||| |||| || || | || |||||||| ||||| || | |
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| T |
29933992 |
agtgcacttgatgctgagtctgaaaaagtggtgcaagatgcacttgactgtgttatggtggaccgaacaacaataatagtagctcataggttatcgacta |
29933893 |
T |
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| Q |
130 |
taaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
193 |
Q |
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| T |
29933892 |
taaagggtgcagatttaattgcagtcgttaagaatggtgtgatatcagagaaaggaaaacatga |
29933829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 51149174 - 51149337
Alignment:
| Q |
30 |
agtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaa |
129 |
Q |
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||||| |||||||| ||||||||||||||||| |||||||||||||| | || | |||||| |||| || || | ||||| ||||| ||||| || | |
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| T |
51149174 |
agtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggttatcgacta |
51149273 |
T |
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| Q |
130 |
taaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
193 |
Q |
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| || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
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| T |
51149274 |
tcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51149337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 51160037 - 51160200
Alignment:
| Q |
30 |
agtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaa |
129 |
Q |
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||||| |||||||| ||||||||||||||||| |||||||||||||| | || | |||||| |||| || || | ||||| ||||| ||||| || | |
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| T |
51160037 |
agtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggttatcgacta |
51160136 |
T |
|
| Q |
130 |
taaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
193 |
Q |
| |
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| T |
51160137 |
tcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51160200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 51202736 - 51202899
Alignment:
| Q |
30 |
agtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaa |
129 |
Q |
| |
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||||| |||||||| |||||||| || ||||| |||||||||||||| | || | |||||| |||| || || | ||||| ||||| ||||| || | |
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| T |
51202736 |
agtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggttatcgacta |
51202835 |
T |
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| Q |
130 |
taaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
193 |
Q |
| |
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| || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
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| T |
51202836 |
tcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51202899 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 49734111 - 49733908
Alignment:
| Q |
24 |
gccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattat |
123 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49734111 |
gccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattgagggtggacagaaccaccattgtggtggctcatagactat |
49734012 |
T |
|
| Q |
124 |
caacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaagggtggcacctatgc |
223 |
Q |
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| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||| |||||||| |||| |||||||| |
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| T |
49734011 |
ctaccataaagggttcaaattcaattgcagtggttaaaaatggagtgattgaagagaaaggaaagcatgaaacgttgctcaacaagagtggtacctatgc |
49733912 |
T |
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| Q |
224 |
ttct |
227 |
Q |
| |
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|||| |
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| T |
49733911 |
ttct |
49733908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 36289061 - 36289245
Alignment:
| Q |
24 |
gccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattat |
123 |
Q |
| |
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||||| |||||||||||||| ||||| |||||||| ||||| |||||||| ||| |||| | ||| ||| ||||||| ||| | ||||| || || |||| |
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| T |
36289061 |
gccaccagtgcccttgatgctgagtccgaaaaagtagttcaggatgcactggatcgagttatggttgaccgaaccacaattatagtggcacacaggttat |
36289160 |
T |
|
| Q |
124 |
caacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaa |
208 |
Q |
| |
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| || || ||||||||| ||| ||||||||| || || ||||| || ||| |||||||||||| ||||| | |||||||||||| |
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| T |
36289161 |
ccactattaagggtgcagatttaattgcagtggtgaagaatggggtcattacagagaaaggaaatcatgaaacattgatcaacaa |
36289245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 42691602 - 42691545
Alignment:
| Q |
21 |
gaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgata |
78 |
Q |
| |
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|||||||| |||||||||||| ||||||| ||||| |||||||||| |||||||||| |
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|
| T |
42691602 |
gaggccactagtgcccttgattcagagtcagaaaagctggttcaagaagcacttgata |
42691545 |
T |
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