View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_low_42 (Length: 205)
Name: NF19307_low_42
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 8e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 8534702 - 8534574
Alignment:
| Q |
71 |
ctggatgaaatgatgaagaaagaacctgagttgaatagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
170 |
Q |
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| T |
8534702 |
ctggatgaaatgatgaagaaagaacctgagttgagtagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
8534603 |
T |
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| Q |
171 |
gaccaagcaaaggagtattatctacccac |
199 |
Q |
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| T |
8534602 |
gaccaagcaaaggagtagtatcttcccac |
8534574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 8599941 - 8599813
Alignment:
| Q |
71 |
ctggatgaaatgatgaagaaagaacctgagttgaatagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
170 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8599941 |
ctggatgaaatgatgaagaaagaacctgagttgagtagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
8599842 |
T |
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| Q |
171 |
gaccaagcaaaggagtattatctacccac |
199 |
Q |
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| T |
8599841 |
gaccaagcaaaggagtagtatcttcccac |
8599813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 8613485 - 8613613
Alignment:
| Q |
71 |
ctggatgaaatgatgaagaaagaacctgagttgaatagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
170 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613485 |
ctggatgaaatgatgaagaaagaacctgagttgagtagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
8613584 |
T |
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| Q |
171 |
gaccaagcaaaggagtattatctacccac |
199 |
Q |
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| T |
8613585 |
gaccaagcaaaggagtagtatcttcccac |
8613613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 14752292 - 14752233
Alignment:
| Q |
134 |
gacacagccacattactctactcatcaggaacaacaggaccaagcaaaggagtattatct |
193 |
Q |
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| T |
14752292 |
gacacagctactctactctactcatctggaacaacaggaccaagcaaaggagtagtatct |
14752233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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