View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_low_5 (Length: 473)
Name: NF19307_low_5
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 75 - 463
Target Start/End: Complemental strand, 1248620 - 1248231
Alignment:
| Q |
75 |
ttctctccatttttgtggtgtaatggtttttgatgtaggaagttgaaataaatgaagggtacttatagggtccaaaactcctttataatgagtaccttgc |
174 |
Q |
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| T |
1248620 |
ttctctccatttttgtggagtaatggtttttgatgtaggaagttgaaataaatgaagggtacttatagggtccaaaactcctttataatgagtaccttgc |
1248521 |
T |
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| Q |
175 |
atgtttatttccgaaaaagtttgattatttttggaattttattactttaacaacaatgtaaaaatcttcatcaagatcacaaataatgtattggtccaag |
274 |
Q |
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| T |
1248520 |
atgtttatttccgaaaaagtttgattatttttggaattttattactttaacaacaaagtaaaaatcttcatcaagatcacaaataatgtattggtccaag |
1248421 |
T |
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| Q |
275 |
atcatgtaataatttctttctggttggggtc-nnnnnnnggaatatgacaccgaaacttttttatatgtatagagattgtgtccatataaaccagtaaaa |
373 |
Q |
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| T |
1248420 |
atcatgtaataatttctttctggttggggtcttttttttggaatatgacaccgaaacttttttatatgtatagagattgtgtccatataaaccagtaaaa |
1248321 |
T |
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| Q |
374 |
taataattttgttgcattattcatttgaaataagcaagtttcacacatgtgagcagggagctatgtgatgtaaagctcttcaaatatgag |
463 |
Q |
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| T |
1248320 |
taataattttgttgcattattcatttgaaataagcaagtttcacacatgtgagcagggagctatgtgatgtaaagcccttcaaatatgag |
1248231 |
T |
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