View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_low_9 (Length: 451)
Name: NF19307_low_9
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 4 - 404
Target Start/End: Complemental strand, 31212157 - 31211751
Alignment:
| Q |
4 |
tcattaccaatataagagaaagaaaggttgtgagatccacagagagaattactttgaagtatatat------acactggaattacaattatagtgtatgg |
97 |
Q |
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||||||||||||||| | |||||| ||| ||| |||||||| |||||||| || |||||||||| ||| ||||| |||||||||||||||||| |
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| T |
31212157 |
tcattaccaatataacaaaaagaagggtcgtgtgatccacatagagaatt---ttcaagtatatattgagagacagtggaactacaattatagtgtatgg |
31212061 |
T |
|
| Q |
98 |
tgatgttg---acattttgagcataatgaaacaaagttggagacaaataagtttcatcaaattgaggagcacaaagattttgggacaggtcagttctttt |
194 |
Q |
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|||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
31212060 |
tgatgttgttgacattttgtggatattgaaacaaagttggagacaaataagtttcatcaaactgaggagcacaaagattttgggataggtcagttctttt |
31211961 |
T |
|
| Q |
195 |
gagtatcatggtgtaactttgtgagtaaatatcaagtattgtgaaattttgtgaggatattagaatggtagtaatgtttttgtggcagttaaggtgaaaa |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31211960 |
gagtatcatggtgtaactttgtgagtaaatatcaagtattgtgaaattttgtgaggatattagaatggtagtaatgtttttgtggcagttaaggtaaaaa |
31211861 |
T |
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| Q |
295 |
tggttgccggcgccgcagtacgaaggacgattttgtccccagaatggatagtaaacgtcggagagatttccacagctgtaggcgtagtctgtgttattac |
394 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||||| |||||| ||||| |||||| | || |
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| T |
31211860 |
tgcttgccggcgccgcagtacgaaggacgattttgtccccagaatggatagtaaatgttggacaaatttccacagttgtaggtgtagtttgtgttttgac |
31211761 |
T |
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| Q |
395 |
aagttgaata |
404 |
Q |
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|| ||||||| |
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| T |
31211760 |
aatttgaata |
31211751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 80 - 369
Target Start/End: Complemental strand, 31002153 - 31001861
Alignment:
| Q |
80 |
tacaattatagtgtatggtgatgtt---gacattttgagcataatgaaacaaagttggagacaaataagtttcatcaaattgaggagcacaaagattttg |
176 |
Q |
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|||||||||||| ||| |||||||| ||||||| || ||| ||||||| || |||| |||||||||| ||| |||| | ||||| |||||||||||| |
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| T |
31002153 |
tacaattatagtatattgtgatgtttatgacatttcgaagatattgaaacataggtggaaacaaataagtatcaacaaacttaggagaacaaagattttg |
31002054 |
T |
|
| Q |
177 |
ggacaggtcagttcttttgagtatcatggtgtaactttgtgagtaaatatcaagtattgtgaaattttgtgaggatattagaatggtagtaatgtt---t |
273 |
Q |
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||||| |||||||| ||| ||||||||| | ||| || || || ||||||| |||||||||||||||||||| |||||||||||||| || | |
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| T |
31002053 |
a---aggtctgttcttttaagtttcatggtgtgattttttgtgttgatttcaagtacagtgaaattttgtgaggatatcagaatggtagtaatattgtct |
31001957 |
T |
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| Q |
274 |
ttgtggcagttaaggtgaaaatggttgccggcgccgcagtacgaaggacgattttgtccccagaatggatagtaaacgtcggagagatttccacag |
369 |
Q |
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| T |
31001956 |
tcgtggcagttaaggtaaaaatgatggcccgcgccgcagtgagaaggacgattttttccccagaatggataagagatgttggtgagatttccacag |
31001861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 130 - 344
Target Start/End: Complemental strand, 31221889 - 31221672
Alignment:
| Q |
130 |
gttggagacaaataagtttcatcaaattgaggagcacaaagattttgggacaggtcagttcttttgagtatcatggtgtaactttgtgagtaaatatcaa |
229 |
Q |
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||||||||||| |||| |||| ||||||||| ||||| ||||||||| ||||| ||||| || ||| | ||||||| | ||||||||| |||||||| |
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| T |
31221889 |
gttggagacaagaaagtatcattgtattgaggagaacaaaaattttgggaaaggtctgttctcttaagtttgatggtgtgaatttgtgagttaatatcaa |
31221790 |
T |
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| Q |
230 |
gtattgtgaaattttgtgaggatattagaatggtagtaa---tgtttttgtggcagttaaggtgaaaatggttgccggcgccgcagtacgaaggacgatt |
326 |
Q |
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||| ||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||| ||| ||||||||||||| ||| | |||||||| |
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| T |
31221789 |
gtactgtgaaattttgtgatgataatagaatggtagtaatactgttgttgtggcagttaaggtaaaacgggttgccggcgccacagcgatacggacgatt |
31221690 |
T |
|
| Q |
327 |
ttgtccccagaatggata |
344 |
Q |
| |
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||||||||| |||||||| |
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| T |
31221689 |
ttgtccccaaaatggata |
31221672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 106 - 344
Target Start/End: Original strand, 15523142 - 15523383
Alignment:
| Q |
106 |
acattttgagcataatgaaacaaagttggagacaaataagtttcatcaaattgaggagcacaaagattttgggacaggtcagttcttttgagtatcatgg |
205 |
Q |
| |
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|||||||| | ||| |||||||||| |||| |||||||||| |||| ||||| ||||| ||| |||||||| ||||| |||||||||||| | ||| |
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| T |
15523142 |
acattttggggatattgaaacaaaggtggaaacaaataagtatcattaaatttaggagaacatagattttgatcaaggtctgttcttttgagtttgatga |
15523241 |
T |
|
| Q |
206 |
tgtaa-ctttgtgagtaaatatcaagtattgtgaaattttgtgaggatattagaa---tggtagtaatgtttttgtggcagttaaggtgaaaatggttgc |
301 |
Q |
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||| ||||| || |||||||||| |||||||||||||||||||| |||| |||| || |||| |||||||||||||||| |||| |||||| |
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| T |
15523242 |
tgtggtctttgct-gtttatatcaagtactgtgaaattttgtgaggataagagaatggtggtggtgttgttgttgtggcagttaaggtaaaaagggttgc |
15523340 |
T |
|
| Q |
302 |
cggcgccgcagtacgaaggacgattttgtccccagaatggata |
344 |
Q |
| |
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| || || || | ||||||||||||||||||| |||||||| |
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| T |
15523341 |
cagccccacattgaaaaggacgattttgtccccaaaatggata |
15523383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 344
Target Start/End: Complemental strand, 31012664 - 31012438
Alignment:
| Q |
121 |
tgaaacaaagttggagacaaataagtttcatcaaattgaggagcacaaagattttgggacaggtcagttcttttgagtatcatggtgtaactttgtgagt |
220 |
Q |
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||||||| || |||| |||||||||| |||| | ||||||||| |||||||||||| ||||| |||||||||||| ||||||||| ||| | || |
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| T |
31012664 |
tgaaacagaggtggaaacaaataagtatcattatattgaggagaacaaagattttgatcaaggtctgttcttttgagtttcatggtgtgtttttctatgt |
31012565 |
T |
|
| Q |
221 |
aaatatcaagtattgtgaaattttgtgaggatattagaatggtagta---atgtttttgtggcagttaaggtgaaaatggttgccggcgccgcagtacga |
317 |
Q |
| |
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|| ||||||| |||||| ||||||||| ||| | |||||||||| |||| |||||||||| ||||||| | ||||||| || || || | | |
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| T |
31012564 |
tgatgtcaagtactgtgaatttttgtgagtataacaaaatggtagtatctttgttattgtggcagtaaaggtgatacgggttgccagcaccacaatgaaa |
31012465 |
T |
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| Q |
318 |
aggacgattttgtccccagaatggata |
344 |
Q |
| |
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||||||||||| ||||||||||||||| |
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| T |
31012464 |
aggacgattttctccccagaatggata |
31012438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 30663965 - 30664043
Alignment:
| Q |
121 |
tgaaacaaagttggagacaaataa-gtttcatcaaattgaggagcacaaagattttgggacaggtcagttcttttgagt |
198 |
Q |
| |
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||||||| ||||||||||||| || || |||||||||||||||| |||||||||||| ||||| |||||||||||| |
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| T |
30663965 |
tgaaacatagttggagacaaaaaaagtatcatcaaattgaggagaacaaagattttgatcaaggtctgttcttttgagt |
30664043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 15493432 - 15493366
Alignment:
| Q |
132 |
tggagacaaataagtttcatcaaattgaggagcacaaagattttgggacaggtcagttcttttgagt |
198 |
Q |
| |
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||||||||||||||| |||| ||||||||||| ||| |||||||| ||||| |||||||||||| |
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| T |
15493432 |
tggagacaaataagtatcatgaaattgaggagaacatagattttgatcaaggtctgttcttttgagt |
15493366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 376
Target Start/End: Complemental strand, 15493173 - 15493076
Alignment:
| Q |
279 |
gcagttaaggtgaaaatggttgccggcgccgcagtacgaaggacgattttgtccccagaatggatagtaaacgtcggagagatttccacagctgtagg |
376 |
Q |
| |
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||||||||||| |||| |||||| || || ||||| ||||||| ||||||||||||||||||| | | || ||||| |||||||||| |||||| |
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| T |
15493173 |
gcagttaaggtaaaaagggttgcgagcaccacagtaaagaggacgactttgtccccagaatggataagagatgttggagatatttccacagttgtagg |
15493076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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