View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19308_high_11 (Length: 434)
Name: NF19308_high_11
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 10864340 - 10864745
Alignment:
| Q |
18 |
ataaaaggcatattccgatgtatctccagatgaatgaatgtctttccttttggcagacctcaaggaaggataaaaatagttttcctctttccagtgttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10864340 |
ataaaaggcatattccgatgtatctccagatgaatgaatgtctttccttttggcagacctcaaggaaggataaaaatagttttcctctttccagtgttga |
10864439 |
T |
|
| Q |
118 |
cctctccttcagctagcaccttctctttttcttttgttctatatgtgcccctcatgaagtcaattcgttcagattatggcaagtttgttgaaccaatttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10864440 |
cctctccttcagctagcaccttctctttttcttttgttctatatgtgcccctcatgaagtcaattcgttcagattatggcaagtttgttggaccaatttc |
10864539 |
T |
|
| Q |
218 |
tcctctagatttgaatgcatgaaattaatggccatcgattcatattcaatctcaagaaattggattgaacactttccagttgcctttctaaactttcaat |
317 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10864540 |
tcctctagctttgaatgcatgaaattaatggccatcgattcatattcaatgtcaagaaattggattgaacactttccagttgcctttctaaactttcaat |
10864639 |
T |
|
| Q |
318 |
aaagtgaacaagcgattcatttaattgttgtttcaaattcattaaatccgttgtcgaaacttcaggccgaggccaacaaaaatctatcctggaaacatat |
417 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
10864640 |
aaattgaacaagcgattcatttaattgttgtttcaaattcattaaatccgttgtcgaaacttcaggctgaggccaacaaaaatctatcttggaaacatat |
10864739 |
T |
|
| Q |
418 |
tttcat |
423 |
Q |
| |
|
|||||| |
|
|
| T |
10864740 |
tttcat |
10864745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University