View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_high_12 (Length: 423)
Name: NF19308_high_12
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 32895844 - 32895446
Alignment:
| Q |
19 |
atggttgcatcctaaaatgcacctacaggctacaatagatccgaagaatgtgacatcttcacaataatttgatatcaaagttagttttatgcactaatga |
118 |
Q |
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| T |
32895844 |
atggttgcatcctaaaatgcacctacaggctacaatagatccgaagaatgtgacatcttcacaataatttgatatcaaagttagttttatgcactaatga |
32895745 |
T |
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| Q |
119 |
ataacacaataatttaacattaacaatttcaaaatttatattgtgcttaatgaaacatgttctattatgagctgaaacataattctttatatatttgaca |
218 |
Q |
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| T |
32895744 |
ataacacaataatttaacattaacaatttctaaatttatattgtgcttaatgaaacatgttctattatgagctgaaacataatgcttgatatatttgaca |
32895645 |
T |
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| Q |
219 |
acttgacataagaaacaaagctatcattcatgcttttttctgtttatcttatggtggtggaaagatagctttaaccaagcagtgctgaaaagtaaatatg |
318 |
Q |
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| T |
32895644 |
acttgacataagaaacaaagctatcattcatgcttttttctgtttatcttatggtggtggaaagatagctttaaccaggcagtgttgaaaagtaaatatg |
32895545 |
T |
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| Q |
319 |
agtggattcaaattactcgactcttttcagttaaattagactctactgcaagagtcactgcatgttattgttatgtatctctatttatgtgagaattat |
417 |
Q |
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| T |
32895544 |
agtgaattcaaattactcgactcttttcagttaaattagactctactgcaagagtcactgcatgttattgttatgtatctctatttatgtgagaattat |
32895446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 32892550 - 32892503
Alignment:
| Q |
245 |
ttcatgcttttttctgtttatcttatggtggtggaaagatagctttaa |
292 |
Q |
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| T |
32892550 |
ttcatgcttttttctgtttaacttctggtggggggaagatagctttaa |
32892503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 16753349 - 16753284
Alignment:
| Q |
318 |
gagtggattcaaattactcgactcttttcagttaaattagactctactgcaagagtcactgcatgt |
383 |
Q |
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| T |
16753349 |
gagtggattcaagttaattgactcttttcgattaaatcagactctattgcacgagtcactgcatgt |
16753284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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