View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19308_high_2 (Length: 583)
Name: NF19308_high_2
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Complemental strand, 41370504 - 41369939
Alignment:
| Q |
1 |
gagttgtttgacagtagagatacaatgatgtgtttcagaaaacttgccatcaaaccttgcaacaaaaagtcatcacaccatagacttcaaaatcaaatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41370504 |
gagttgtttgacagtagagatacaatgatatgtttcagaaaacttgccatcaaactttgcaacaaaaagtcatcacaccatagacttcaaaatcaaatac |
41370405 |
T |
|
| Q |
101 |
atgaagttgccctacctttgaattctaaatccaaaagtcaaaaggtacatttacaatattaagatttttaacttttatctttttaatagtaatcattgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41370404 |
atgaagttgccctacctttgaattctaaatccaaaagtcaaaaggtacatttacaatattaagatttttaacttttatctttttaatagtaatcattgat |
41370305 |
T |
|
| Q |
201 |
atatttacggttatagttgaaagttaaaaagccacccaaaggtatctaatctctttatgtatagtataaattgnnnnnnnagggagtatagattgttgtt |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41370304 |
atatttacgattatagttgaaagttaaaaagccacccaaaggtatctaatctctttatgtatagtataaattgtttttttagggagtatagattgttgtt |
41370205 |
T |
|
| Q |
301 |
gttgcgatgagttgaaattaaagatcaatttgataaattgacagagattctgacacctttatattttagatatatatctctaacatgcatatagatgtgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41370204 |
gttgcgatgagttgaaattaaagatcaatttgataaattgacagagattctgacacctttatattttagatatatatctctaacatgcatatagatgtgt |
41370105 |
T |
|
| Q |
401 |
gcgtagttttgtttataatagagtcaaattttaatttcagaaaaggaaatttgaaaatgctagagatcaggcacaaaggagtttatttttacaaggaaca |
500 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41370104 |
gcgtagttttgttaataatagagtcaaattttaatttcagaaaaggaaatttgaaaatgctagagatcaggcacaaaggagtttatttttacaaggaaca |
41370005 |
T |
|
| Q |
501 |
aaggagtttattcttcctactctagataacgaagtagaatattgtggtatttgtatggaagactgt |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41370004 |
aaggagtttattcttcctactctagataacgaagtagaatactgtggtatttgtatggaagactgt |
41369939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 15835163 - 15835275
Alignment:
| Q |
25 |
atgatgtgtttcagaaaacttgccatcaaaccttgcaacaaaaagtcatcacaccatagacttcaaaatcaaatacatgaagttgccctacctttgaatt |
124 |
Q |
| |
|
||||| || |||| ||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
15835163 |
atgatatgcttcaaaaatcttgccatcaaaccttgtgacaagaagtcatcacaccaaagacttcaaaatcaaatacaagaagtttacgtacctttgaatt |
15835262 |
T |
|
| Q |
125 |
ctaaatccaaaag |
137 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15835263 |
ctaaatccaaaag |
15835275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 5 - 167
Target Start/End: Complemental strand, 24479913 - 24479751
Alignment:
| Q |
5 |
tgtttgacagtagagatacaatgatgtgtttcagaaaacttgccatcaaaccttgcaacaaaaagtcatcacaccatagacttcaaaatcaaatacatga |
104 |
Q |
| |
|
||||||| | ||||||||| ||||| || ||||||||||||||||||||| |||| |||| |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
24479913 |
tgtttgatattagagatacgatgatatgcttcagaaaacttgccatcaaagattgcgacaagaagtcatcccaccatagacgtcaaaatcaaatacatga |
24479814 |
T |
|
| Q |
105 |
agttgccctacctttgaattctaaatccaaaagtcaaaaggtacatttacaatattaagattt |
167 |
Q |
| |
|
||||| | | ||||||||||||||||||||||| || ||||||||||||| | |||||||||| |
|
|
| T |
24479813 |
agttgtcgtgcctttgaattctaaatccaaaagacataaggtacatttacgacattaagattt |
24479751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 24692269 - 24692402
Alignment:
| Q |
25 |
atgatgtgtttcagaaaacttgccatcaaaccttgcaacaaaaagtcatcacaccatagacttcaaaatcaaatacatgaagttgccctacctttgaatt |
124 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| |||| |||| ||||| ||||||||||||||||||||||||||||| ||||||| | ||| |||||||| |
|
|
| T |
24692269 |
atgatgtgcttcagaaaacttgccattaaacgttgcgacaagaagtc-tcacaccatagacttcaaaatcaaatacaagaagttggcgtacttttgaatt |
24692367 |
T |
|
| Q |
125 |
ctaaatccaaaagtcaaaaggtacatttacaatatt |
160 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
24692368 |
ctaaatccaaaagtcaaaaag-acatctacaatatt |
24692402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 462 - 562
Target Start/End: Original strand, 24693560 - 24693660
Alignment:
| Q |
462 |
agagatcaggcacaaaggagtttatttttacaaggaacaaaggagtttattcttcctactctagataacgaagtagaatattgtggtatttgtatggaag |
561 |
Q |
| |
|
||||||||||| |||| | ||||||||| |||| || |||||||||||||| || ||||||||||| | |||| |||| ||||||||||||||||||||| |
|
|
| T |
24693560 |
agagatcaggcgcaaaagtgtttattttcacaacgagcaaaggagtttatttttgctactctagatgatgaaggagaacattgtggtatttgtatggaag |
24693659 |
T |
|
| Q |
562 |
a |
562 |
Q |
| |
|
| |
|
|
| T |
24693660 |
a |
24693660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 24479563 - 24479487
Alignment:
| Q |
311 |
gttgaaattaaagatcaatttgataaattgacagagattctgacacctttatattttagatatatatctctaacatg |
387 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| ||||||||||| || || ||||| ||||| ||||| |
|
|
| T |
24479563 |
gttggaattaaagatcaatttgataaattgaaagagattctaacacctttataattaaggtatatctctcttacatg |
24479487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 564
Target Start/End: Complemental strand, 24479349 - 24479257
Alignment:
| Q |
472 |
cacaaaggagtttatttttacaaggaacaaaggagtttattcttcctactctagataacgaagtagaatattgtggtatttgtatggaagact |
564 |
Q |
| |
|
|||| ||||||||||||| ||||| | |||| ||| ||||| |||||||||||||| | |||| ||||||||||| || ||||| ||||||| |
|
|
| T |
24479349 |
cacagaggagtttattttcacaagaagcaaatgagattatttttcctactctagatgatgaaggagaatattgtgctacttgtacagaagact |
24479257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 24479487 - 24479436
Alignment:
| Q |
403 |
gtagttttgtttataatagagtcaaattttaatttcagaaaaggaaatttga |
454 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
24479487 |
gtagttttatttataatagagtcaattttttatttcagaagaggaaatttga |
24479436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University