View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19308_high_20 (Length: 325)

Name: NF19308_high_20
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19308_high_20
NF19308_high_20
[»] chr1 (2 HSPs)
chr1 (22-306)||(23027294-23027578)
chr1 (41-197)||(10213828-10213984)
[»] chr7 (1 HSPs)
chr7 (38-306)||(48777694-48777962)
[»] chr8 (2 HSPs)
chr8 (25-305)||(16974433-16974713)
chr8 (41-74)||(9991328-9991361)
[»] chr3 (2 HSPs)
chr3 (22-306)||(12699109-12699390)
chr3 (41-74)||(12949712-12949745)
[»] chr4 (1 HSPs)
chr4 (25-306)||(46562145-46562426)
[»] chr2 (1 HSPs)
chr2 (25-306)||(356170-356452)
[»] chr5 (3 HSPs)
chr5 (36-306)||(8008820-8009090)
chr5 (41-303)||(25409045-25409307)
chr5 (43-306)||(10459764-10460027)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 306
Target Start/End: Original strand, 23027294 - 23027578
Alignment:
Q  22 aaaaattcaatggagaacccccatacaaagaagcgggtgattccaccaatcatactagctaaaactacaatatttaaaatttgctttcatccnnnnnnnt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       |    
T  23027294 aaaaattcaatggagaacccccatacaaagaagcgggtgattccaccaatcataccagctaaaactacaatatttaaaatttgctttcatccaaaaaaat 23027393  T
Q  122 gaataacgcttcacattgtctaataaaccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaaacgcaagaat 221  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23027394 gaataacgcttcacattgtctaataatccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaagcgcaagaat 23027493  T
Q  222 accaaataccttgcataaaaacatgagtgcttctaggcagtcccgccatgaaacaaaaatgcttgtgatgatcacgtaactcaaa 306  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  23027494 accaaataccttgcataaaaacatgagtgcatctaggcaatcccgccatgaaacagaaatgcttgtgatgatcacgtaactcaaa 23027578  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 10213828 - 10213984
Alignment:
Q  41 cccatacaaagaagcgggtgattccaccaatcatactagctaaaactacaatatttaaaatttgctttcatccnnnnnnntgaataacgcttcacattgt 140  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||  |||||||||||||       | |||||||||| |||||||    
T  10213828 cccatacaaagaagcgggtgagtccaccaatcataccagctaaaactacaagatttaagttttgctttcatccaaaaaaataaataacgcttaacattgt 10213927  T
Q  141 ctaataaaccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattct 197  Q
    | | |||||| |||||||| |||||||||||||||||||||| |||||||| |||||    
T  10213928 caagtaaaccgtgagaatcaaaaggctcgttttggaaaatgcatttgttccaattct 10213984  T

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Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 38 - 306
Target Start/End: Original strand, 48777694 - 48777962
Alignment:
Q  38 acccccatacaaagaagcgggtgattccaccaatcatactagctaaaactacaatatttaaaatttgctttcatccnnnnnnntgaataacgcttcacat 137  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||| ||||    
T  48777694 acccccatacaaagaagcgggtgagtccaccaatcataccagctaaaactacaatatttaaaatttgctttcatccgaaaaaatgaataacgcttaacat 48777793  T
Q  138 tgtctaataaaccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaaacgcaagaataccaaataccttgcat 237  Q
    ||||||||||||||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  48777794 tgtctaataaaccttgagaatcgaacgactcgttttggaaaatacatttgttccgattctgccaaataacccaagcgcaagaataccaaataccttacat 48777893  T
Q  238 aaaaacatgagtgcttctaggcagtcccgccatgaaacaaaaatgcttgtgatgatcacgtaactcaaa 306  Q
    |||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||| |||||||||||||    
T  48777894 aaaaacatgagtgcatcttggcactcccgccatgaaacagaaatgcttgtgatgagcacgtaactcaaa 48777962  T

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Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 305
Target Start/End: Original strand, 16974433 - 16974713
Alignment:
Q  25 aattcaatggagaacccccatacaaagaagcgggtgattccaccaatcatactagctaaaactacaatatttaaaatttgctttcatccnnnnnnntgaa 124  Q
    ||||||||  || |||||||||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||||||||||||||       ||||    
T  16974433 aattcaataaaggacccccatacaaagaagcgggtgagtccaccaatcataccagttaaaactacagtatttaaaatttgctttcatccaaaaaaatgaa 16974532  T
Q  125 taacgcttcacattgtctaataaaccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaaacgcaagaatacc 224  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  16974533 taacgcttaacattgtctagtaaaccgtgagaatcgaaaggctcgttttgaaaaatgcatttgttccgattctgccaaataacccaagcgcaagaatacc 16974632  T
Q  225 aaataccttgcataaaaacatgagtgcttctaggcagtcccgccatgaaacaaaaatgcttgtgatgatcacgtaactcaa 305  Q
    |||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  16974633 aaattccttgcataaaaacatgagtgcatctaggaagtcccgccatgaaacagaaatgcttgtgatgatcatgtaactcaa 16974713  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 9991361 - 9991328
Alignment:
Q  41 cccatacaaagaagcgggtgattccaccaatcat 74  Q
    |||||||||||||||||||| |||||||||||||    
T  9991361 cccatacaaagaagcgggtgtttccaccaatcat 9991328  T

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Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 306
Target Start/End: Complemental strand, 12699390 - 12699109
Alignment:
Q  22 aaaaattcaatggagaacccccatacaaagaagcgggtgattccaccaatcatactagctaaaactacaatatttaaaatttgctttcatccnnnnnnnt 121  Q
    |||||||||||| ||  ||||||||||||||| ||||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||       |    
T  12699390 aaaaattcaatgaagggcccccatacaaagaaacgggtgagtccaccaatcatgccagctaaatctacaatatttaaaatttgctttcatccaaaaaaat 12699291  T
Q  122 gaataacgcttcacattgtctaataaaccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaaacgcaagaat 221  Q
    ||||   |||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12699290 gaat---gcttaacattgtctagtaaaccgtgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaagcgcaagaat 12699194  T
Q  222 accaaataccttgcataaaaacatgagtgcttctaggcagtcccgccatgaaacaaaaatgcttgtgatgatcacgtaactcaaa 306  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  12699193 accaaataccttgcataaaaacatgagtgcatctaggaagtcccgccatgaaacagaaatgattgtgatgatcacgtagctcaaa 12699109  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 12949712 - 12949745
Alignment:
Q  41 cccatacaaagaagcgggtgattccaccaatcat 74  Q
    |||||||||||||||||||| |||||||||||||    
T  12949712 cccatacaaagaagcgggtgtttccaccaatcat 12949745  T

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Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 25 - 306
Target Start/End: Original strand, 46562145 - 46562426
Alignment:
Q  25 aattcaatggagaacccccatacaaagaagcgggtgattccaccaatcatactagctaaaactacaatatttaaaatttgctttcatccnnnnnnntgaa 124  Q
    ||||||| | || |||| ||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||| |||||||||||||       ||||    
T  46562145 aattcaaagaaggaccctcatacaaagaagcgggtgagtccaccaatcataccagttaaaactacaagatttaaattttgctttcatccaaaaaaatgaa 46562244  T
Q  125 taacgcttcacattgtctaataaaccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaaacgcaagaatacc 224  Q
    |||||||| |||||||| | |||||| ||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  46562245 taacgcttaacattgtcaagtaaaccgtgagaatcgaaaggctcattttgaaaaatgcatttgttccgattcttccaaataacccaaatgcaagaatacc 46562344  T
Q  225 aaataccttgcataaaaacatgagtgcttctaggcagtcccgccatgaaacaaaaatgcttgtgatgatcacgtaactcaaa 306  Q
    ||||||||||||||||| ||||| ||| |||||| ||||||||||||||||| || |||||||| ||||| |||||||||||    
T  46562345 aaataccttgcataaaagcatgactgcatctaggaagtcccgccatgaaacataagtgcttgtggtgatcgcgtaactcaaa 46562426  T

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Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 25 - 306
Target Start/End: Complemental strand, 356452 - 356170
Alignment:
Q  25 aattcaatggagaacccccatacaaagaagcgggtgattccaccaatcatactagctaaaactacaatatttaaaatttgctttcatccnnnnnnn-tga 123  Q
    ||||||| | || ||||||||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||  ||| |||||||||        |||    
T  356452 aattcaaagaaggacccccatacaaagaagtgggtgagtccaccaatcataccagctaaaactacaagatttaagttttactttcatccaaaaaaaatga 356353  T
Q  124 ataacgcttcacattgtctaataaaccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaaacgcaagaatac 223  Q
    ||||||||| |||||||| | |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  356352 ataacgcttaacattgtcaagtaaaccgtgagaatcgaaaggctcgttttggaaaatgcatttgttccgattcttccaaataacccaaacgcaagaatac 356253  T
Q  224 caaataccttgcataaaaacatgagtgcttctaggcagtcccgccatgaaacaaaaatgcttgtgatgatcacgtaactcaaa 306  Q
    ||||||||||||| |||| |||||||||  ||||  | ||||||||||||||| |||||| |||| ||||| |||||||||||    
T  356252 caaataccttgcagaaaagcatgagtgcacctagaaattcccgccatgaaacagaaatgcatgtggtgatcgcgtaactcaaa 356170  T

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Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 306
Target Start/End: Complemental strand, 8009090 - 8008820
Alignment:
Q  36 gaacccccatacaaagaagcgggtgattccaccaatcatactagctaaaactacaatatttaaaatttgctttcatccnnnnnnntgaataacgcttcac 135  Q
    |||| ||||||||||||||||| ||  |||||||||||  | ||||| |||||||| ||||| | || ||||||||||       |||||| ||||| ||    
T  8009090 gaacacccatacaaagaagcggatgtgtccaccaatcaacccagctataactacaagatttacacttggctttcatccataaaaatgaatagcgcttaac 8008991  T
Q  136 attgtctaataaaccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaaacgcaagaataccaaataccttgc 235  Q
     ||||| | |||||| |||  |||| ||||||||||||| ||||  | | |||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  8008990 tttgtcaagtaaaccgtgaatatcggaaggctcgttttgaaaaaaacatatgttccgattcttccaaataacccaaacacaagaataccagataccttgc 8008891  T
Q  236 ataaaaacatgagtgcttctaggcagtcccgccatgaaacaaaaatgcttgtgatgatcacgtaactcaaa 306  Q
    |  ||| ||||| | | | |||| |||||||||||  ||||||||||  |||| ||||| |||||||||||    
T  8008890 aagaaagcatgaatacatttagggagtcccgccatataacaaaaatgtatgtggtgatcgcgtaactcaaa 8008820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 41 - 303
Target Start/End: Original strand, 25409045 - 25409307
Alignment:
Q  41 cccatacaaagaagcgggtgattccaccaatcatactagctaaaactacaatatttaaaatttgctttcatccnnnnnnntgaataacgcttcacattgt 140  Q
    ||||||||||||||||| ||  |||||||||||  | |||||  ||||||| ||||| | || ||||||||||       |||||| ||||| || ||||    
T  25409045 cccatacaaagaagcggatgtgtccaccaatcaacccagctattactacaagatttacacttggctttcatccataaaaatgaatagcgcttaactttgt 25409144  T
Q  141 ctaataaaccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaaacgcaagaataccaaataccttgcataaa 240  Q
    | | |||||| |||  |||| ||||||||||||| ||||  | ||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||  ||    
T  25409145 caagtaaaccgtgaatatcggaaggctcgttttgaaaaaaacatttgttctgattcttccaaataacccaaacacaagaataccagataccttgcaagaa 25409244  T
Q  241 aacatgagtgcttctaggcagtcccgccatgaaacaaaaatgcttgtgatgatcacgtaactc 303  Q
    | ||||||| | |||||| |||||||||||  |||| |||||  |||| ||||| ||||||||    
T  25409245 agcatgagtacatctaggaagtcccgccatataacagaaatgtatgtggtgatcgcgtaactc 25409307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 43 - 306
Target Start/End: Original strand, 10459764 - 10460027
Alignment:
Q  43 catacaaagaagcgggtgattccaccaatcatactagctaaaactacaatatttaaaatttgctttcatccnnnnnnntgaataacgcttcacattgtct 142  Q
    ||||||||||||||| |   |||||||||||  | | ||| |||||||| ||||| | || ||||||||||       |||||| ||||| || |||||     
T  10459764 catacaaagaagcggatatgtccaccaatcaacccaactataactacaagatttacacttggctttcatccataaaaatgaatagcgcttaactttgtca 10459863  T
Q  143 aataaaccttgagaatcgaaaggctcgttttggaaaatgcttttgttccgattctgccaaataacccaaacgcaagaataccaaataccttgcataaaaa 242  Q
    | |||||| |||  |||| || |||||||||| ||||  | | |||||||||||| |||||||| |||||| ||||||||||| ||||||||||  |||     
T  10459864 agtaaaccgtgaatatcggaatgctcgttttgaaaaaaacatatgttccgattcttccaaataatccaaacacaagaataccagataccttgcaagaaag 10459963  T
Q  243 catgagtgcttctaggcagtcccgccatgaaacaaaaatgcttgtgatgatcacgtaactcaaa 306  Q
    ||||||| | |||||| |||||||||||  ||||||||||  |||| ||||| |||||||||||    
T  10459964 catgagtacatctagggagtcccgccatataacaaaaatgtatgtggtgatcgcgtaactcaaa 10460027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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