View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_high_22 (Length: 309)
Name: NF19308_high_22
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 38293179 - 38293484
Alignment:
| Q |
1 |
ggcaattatatttgctgttagctctcgaaattcttcagtcatctctattttctttgatttctcctttgtttcaatagcttgctttttccactcttctagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38293179 |
ggcaattatatttgctgttagctctcgaaattcttcagtcatctctattttctttgatttctcctttgtttcaatagcttgctttttccactcttctagc |
38293278 |
T |
|
| Q |
101 |
atggaaatggtacatgctgccattctacttatcataacctgtcaaatatatgatatagcatttagaatgcacgcatatacaatgccaaatgccaatgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38293279 |
atggaaatggtacatgctgccattctacttatcataacctgtcaaatatatgatatagcatttagaatgcacgcatatacaatgccaaatgccaatgaaa |
38293378 |
T |
|
| Q |
201 |
gaagaattaatttctaatctttttacttatttttaccaatgactat-----------------gtatcaactcgagataacaaagatctatttaaggggt |
283 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
38293379 |
gaagaattaatttctattctttttacttatttttaccaatgactattttcttgataaatcaaggtatcgactcgagataacaaagatctatttaaggggt |
38293478 |
T |
|
| Q |
284 |
tgatat |
289 |
Q |
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|||||| |
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| T |
38293479 |
tgatat |
38293484 |
T |
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