View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19308_high_27 (Length: 273)

Name: NF19308_high_27
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19308_high_27
NF19308_high_27
[»] chr4 (3 HSPs)
chr4 (1-254)||(51700155-51700408)
chr4 (41-142)||(56341708-56341809)
chr4 (165-251)||(18902108-18902194)
[»] chr5 (8 HSPs)
chr5 (48-142)||(7823020-7823114)
chr5 (39-122)||(35074041-35074124)
chr5 (60-141)||(29681584-29681665)
chr5 (176-251)||(24213344-24213419)
chr5 (40-78)||(25214334-25214372)
chr5 (40-78)||(25278484-25278522)
chr5 (160-254)||(35074161-35074255)
chr5 (177-250)||(31109054-31109127)
[»] chr2 (8 HSPs)
chr2 (15-119)||(21294804-21294907)
chr2 (60-142)||(19912431-19912513)
chr2 (61-137)||(21289551-21289627)
chr2 (60-124)||(45276510-45276574)
chr2 (175-250)||(21294956-21295031)
chr2 (159-249)||(45276395-45276485)
chr2 (162-245)||(21289645-21289728)
chr2 (39-69)||(22425206-22425236)
[»] chr1 (5 HSPs)
chr1 (46-251)||(28201570-28201774)
chr1 (182-253)||(18640560-18640631)
chr1 (170-250)||(11444080-11444160)
chr1 (46-91)||(29530294-29530340)
chr1 (176-229)||(29530164-29530217)
[»] chr6 (1 HSPs)
chr6 (11-69)||(17190908-17190966)
[»] chr3 (2 HSPs)
chr3 (176-250)||(44122054-44122128)
chr3 (176-247)||(44126784-44126855)
[»] chr7 (5 HSPs)
chr7 (47-91)||(7280262-7280307)
chr7 (39-103)||(17188549-17188613)
chr7 (46-103)||(34225969-34226027)
chr7 (46-103)||(34230097-34230155)
chr7 (170-229)||(7578601-7578661)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 51700155 - 51700408
Alignment:
Q  1 catagtgaatctctaagataattaagtcattgctctggtagagtctcgtgctgataacatgttatgaaataaactaa----atgacaagatcaaatgtag 96  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||||||||    
T  51700155 catactgaatctctaagataattaagtcattgctctggtagagtctcgtgctgataacatattatgaaataaactaattaaatgacaagatcaaatgtag 51700254  T
Q  97 agaagataatcaaagatagagaagatgatgacttttgtattattctagaaacaagctagtgtattacattaagatatgagtcctctttatatgatacaaa 196  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||    
T  51700255 agaagataatcaaagatagagaagatgatggcttttgtattattctagaaacaag----tgtattacattaagatatgagtcctctttatatgatacaaa 51700350  T
Q  197 tgagcatgtgaatgatcacaataattaaggaccgataatcatacattcactaatgaga 254  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  51700351 tgagcatgtgaatgatcaaaataattaagaaccgataatcatacattcactaatgaga 51700408  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 56341708 - 56341809
Alignment:
Q  41 gagtctcgtgctgataacatgttatgaaataaactaaatgacaagatcaaatgtagagaagataatcaaagatagagaagatgatgacttttgtattatt 140  Q
    |||| ||| |||||||||||||||| ||||||| ||||||||||||| |||  |||||||||| ||||||||   |||||||||    ||||||||||||    
T  56341708 gagtttcgggctgataacatgttataaaataaattaaatgacaagataaaaaatagagaagatgatcaaagaccaagaagatgagagtttttgtattatt 56341807  T
Q  141 ct 142  Q
    ||    
T  56341808 ct 56341809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 18902108 - 18902194
Alignment:
Q  165 ttaagatatgagtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattcactaatg 251  Q
    |||| |||||||||   |||||| || ||||||||||| ||||| ||||| || |||||||||||  ||| ||| ||||||||||||    
T  18902108 ttaacatatgagtcagatttataggacacaaatgagcaagtgaaagatcaaaacaattaaggaccattaagcatccattcactaatg 18902194  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 7823020 - 7823114
Alignment:
Q  48 gtgctgataacatgttatgaaataaactaaatgacaagatcaaatgtagagaagataatcaaagatagagaagatgatgacttttgtattattct 142  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  7823020 gtgctgataacgtgttatgaaataaactaaatgacaaaatcaaatgtagagaagataatcaaagatagagaagatgagaacttttgtattattct 7823114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 35074041 - 35074124
Alignment:
Q  39 tagagtctcgtgctgataacatgttatgaaataaactaaatgacaagatcaaatgtagagaagataatcaaagatagagaagat 122  Q
    |||||| |||||  |||||  |||||||||||||| |||||||||||| ||||  || ||||||| ||||||||||||||||||    
T  35074041 tagagtttcgtgtcgataatgtgttatgaaataaaataaatgacaagagcaaaaataaagaagatgatcaaagatagagaagat 35074124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 29681584 - 29681665
Alignment:
Q  60 tgttatgaaataaactaaatgacaagatcaaatgtagagaagataatcaaagatagagaagatgatgacttttgtattattc 141  Q
    |||||||||||||||||||||||||||| |||  |||||||||  | ||||||||||||| ||||    |||||||||||||    
T  29681584 tgttatgaaataaactaaatgacaagatgaaaaatagagaagaagaccaaagatagagaaaatgaaagtttttgtattattc 29681665  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 24213344 - 24213419
Alignment:
Q  176 gtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattcactaatg 251  Q
    ||||| |||||| || ||||||||||| ||||||||||| |  |||||| |||| |||| |||||||| |||||||    
T  24213344 gtcctatttataggacacaaatgagcaagtgaatgatcaaaccaattaaagaccaataaccatacatttactaatg 24213419  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 25214334 - 25214372
Alignment:
Q  40 agagtctcgtgctgataacatgttatgaaataaactaaa 78  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  25214334 agagtttcgtgctgataacgtgttatgaaataaactaaa 25214372  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 25278484 - 25278522
Alignment:
Q  40 agagtctcgtgctgataacatgttatgaaataaactaaa 78  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  25278484 agagtttcgtgctgataacgtgttatgaaataaactaaa 25278522  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 35074161 - 35074255
Alignment:
Q  160 ttacattaagatatgagtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattcactaatgaga 254  Q
    ||||| ||| |||||||||   |||| | ||||||||||||||  | |||||||| |  |||||||||||  ||||||||||||||||| |||||    
T  35074161 ttacactaaaatatgagtctcatttacaggatacaaatgagcaaattaatgatcaaagcaattaaggaccactaatcatacattcactagtgaga 35074255  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 31109054 - 31109127
Alignment:
Q  177 tcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattcactaat 250  Q
    |||| ||||||||| ||||||||||| ||||||||||  | | ||||| ||||  ||| |||||||||||||||    
T  31109054 tcctatttatatgacacaaatgagcaagtgaatgatcgaagtcattaaagaccattaaacatacattcactaat 31109127  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 21294804 - 21294907
Alignment:
Q  15 aagataattaagtcattgctctggtagagtctcgtgctgataacatgttatgaaataaactaaatgacaagatcaaatgtagagaagataatcaaagata 114  Q
    |||||||||||| |||| || ||||||||| ||||||||||||| |||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  21294804 aagataattaagacatttct-tggtagagtttcgtgctgataacgtgttataaaataaactaaattacaaaatcaaatgtagagaagataatcaaagata 21294902  T
Q  115 gagaa 119  Q
    |||||    
T  21294903 gagaa 21294907  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 19912513 - 19912431
Alignment:
Q  60 tgttatgaaataaactaaatgacaagatcaaatgtagagaagataatcaaagatagagaagatgatgacttttgtattattct 142  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  19912513 tgttatgaaataaactaaatgacaaaatcaaatgtagagaagataatcaaagatagagaagatgagagcttttgtattattct 19912431  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 21289551 - 21289627
Alignment:
Q  61 gttatgaaataaactaaatgacaagatcaaatgtagagaagataatcaaagatagagaagatgatgacttttgtatt 137  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||   ||||||||||    
T  21289551 gttataaaataaactaaatgacaaaatcaaatgtagagaagataatcaaagatagagaacatgagagcttttgtatt 21289627  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 45276574 - 45276510
Alignment:
Q  60 tgttatgaaataaactaaatgacaagatcaaatgtagagaagataatcaaagatagagaagatga 124  Q
    |||||||||||||||||||||||||||| |||  ||| |||||| || |||||||||||||||||    
T  45276574 tgttatgaaataaactaaatgacaagataaaaaatagtgaagatgataaaagatagagaagatga 45276510  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 21294956 - 21295031
Alignment:
Q  175 agtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattcactaat 250  Q
    |||||| |||||| |||||||||||||| ||||||||||| | | ||||||||||  |||  ||||||||||||||    
T  21294956 agtcctatttataggatacaaatgagcaagtgaatgatcaaagtcattaaggaccattaaatatacattcactaat 21295031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 45276485 - 45276395
Alignment:
Q  159 attacattaagatatgagtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattcactaa 249  Q
    |||||| ||| ||||||||||| |||||| || ||||||||| | ||||||| ||| ||  ||||||||||  ||| ||||||||||||||    
T  45276485 attacactaaaatatgagtcctatttataggacacaaatgagtaagtgaatggtcaaaactattaaggaccactaaccatacattcactaa 45276395  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 21289645 - 21289728
Alignment:
Q  162 acattaagatatgagtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattca 245  Q
    ||||||  |||| |||||| |||||| || ||||||||||| ||||||||||| | |||||||||| |  ||| ||||||||||    
T  21289645 acattacaatataagtcctatttataggacacaaatgagcaagtgaatgatcaaagtaattaaggatcattaagcatacattca 21289728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 22425236 - 22425206
Alignment:
Q  39 tagagtctcgtgctgataacatgttatgaaa 69  Q
    |||||||||||||||||||||||||||||||    
T  22425236 tagagtctcgtgctgataacatgttatgaaa 22425206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 28201570 - 28201774
Alignment:
Q  46 tcgtgctgataacatgttatgaaataaactaaatgacaagatcaaatgtagagaagataatcaaagatagagaagatgatgacttttgtattattctaga 145  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||| ||||||||||||||| ||||    ||||||| ||||||       
T  28201570 tcgtgctgataacatgatatgaaataaactaaatgacaagataaaaaatagagaagatgatcaaagatagagaatatgagtgtttttgtactattctctt 28201669  T
Q  146 aacaagctagtg-tattacattaagatatgagtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattc 244  Q
     |||||   ||| ||||||||||| ||||||||| | |||||| || | |||||| || |||||| |||| |  |||||| |||   ||| |||||||||    
T  28201670 tacaag--tgtgctattacattaaaatatgagtcatatttataggacataaatgaacaagtgaattatcaaagcaattaaagactactaaccatacattc 28201767  T
Q  245 actaatg 251  Q
    |||||||    
T  28201768 actaatg 28201774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 18640560 - 18640631
Alignment:
Q  182 tttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattcactaatgag 253  Q
    |||||| || ||||||||||| ||||||||||| |  |||||||||||  ||| ||||||||||||||||||    
T  18640560 tttataggacacaaatgagcaagtgaatgatcaaagcaattaaggaccactaaccatacattcactaatgag 18640631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 11444080 - 11444160
Alignment:
Q  170 atatgagtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattcactaat 250  Q
    |||| |||||| |||||| || ||||||||||| ||||||||||| | | |||||| |||  ||| |||||||||||||||    
T  11444080 atataagtcctatttataggacacaaatgagcaagtgaatgatcaaagtcattaagaaccattaagcatacattcactaat 11444160  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 29530340 - 29530294
Alignment:
Q  46 tcgtgctgataacatgttatgaaataaactaaatg-acaagatcaaa 91  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||    
T  29530340 tcgtgctgataacatgtaatgaaataaactaaaagcacaagatcaaa 29530294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 29530217 - 29530164
Alignment:
Q  176 gtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggacc 229  Q
    ||||| ||||||||| ||||||||||| ||||||||||| |  |||||||||||    
T  29530217 gtcctatttatatgacacaaatgagcaagtgaatgatcaaaccaattaaggacc 29530164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 17190966 - 17190908
Alignment:
Q  11 ctctaagataattaagtcattgctctggtagagtctcgtgctgataacatgttatgaaa 69  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||  ||||||||||    
T  17190966 ctctaagataattaagtcattgctctagtagagtctcgtgctaataatttgttatgaaa 17190908  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 44122054 - 44122128
Alignment:
Q  176 gtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattcactaat 250  Q
    ||||| |||||| || ||||||||||| ||||||||||| | | ||||||||||  ||| |||||||||||||||    
T  44122054 gtcctatttataggacacaaatgagcaggtgaatgatcaaagtcattaaggaccattaagcatacattcactaat 44122128  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 44126784 - 44126855
Alignment:
Q  176 gtcctctttatatgatacaaatgagcatgtgaatgatcacaataattaaggaccgataatcatacattcact 247  Q
    ||||| |||||| || ||||||||||| ||||||||||| | | ||||||||||  ||| ||||||||||||    
T  44126784 gtcctatttataggacacaaatgagcaagtgaatgatcaaagtcattaaggaccattaaacatacattcact 44126855  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 7280307 - 7280262
Alignment:
Q  47 cgtgctgataacatgttatgaaataaactaaatg-acaagatcaaa 91  Q
    |||||||||||||||||||||||||||||||| | |||||||||||    
T  7280307 cgtgctgataacatgttatgaaataaactaaaagtacaagatcaaa 7280262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 17188613 - 17188549
Alignment:
Q  39 tagagtctcgtgctgataacatgttatgaaataaactaaatgacaagatcaaatgtagagaagat 103  Q
    ||||| ||||| |||||||| |||||| || ||||||||||||||| ||||||  ||||||||||    
T  17188613 tagagcctcgtactgataacgtgttataaactaaactaaatgacaatatcaaaaatagagaagat 17188549  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 34225969 - 34226027
Alignment:
Q  46 tcgtgctgataacatgttatgaaataaact-aaatgacaagatcaaatgtagagaagat 103  Q
    ||||| ||||||| |||||||||||||||| ||| ||||||||||||| | ||||||||    
T  34225969 tcgtgttgataacgtgttatgaaataaactaaaaagacaagatcaaatatggagaagat 34226027  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 34230097 - 34230155
Alignment:
Q  46 tcgtgctgataacatgttatgaaataaact-aaatgacaagatcaaatgtagagaagat 103  Q
    ||||| ||||||| |||||||||||||||| ||| ||||||||||||| | ||||||||    
T  34230097 tcgtgttgataacgtgttatgaaataaactaaaaagacaagatcaaatatggagaagat 34230155  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 7578661 - 7578601
Alignment:
Q  170 atatgagtcctctttatatgatacaa-atgagcatgtgaatgatcacaataattaaggacc 229  Q
    ||||||||||| |||||| ||||||| || |||| ||||||||||| | ||||||||||||    
T  7578661 atatgagtcctatttataggatacaatataagcaagtgaatgatcaaagtaattaaggacc 7578601  T

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