View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_high_28 (Length: 272)
Name: NF19308_high_28
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 44884273 - 44884017
Alignment:
| Q |
1 |
tcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactcagggattctgtctcgtgttg |
100 |
Q |
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| T |
44884273 |
tcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcatggtttgtggaagctctcaacaactcagggattctgtctcgtgttg |
44884174 |
T |
|
| Q |
101 |
tttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaaatactaataataatgttat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44884173 |
tttcagattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattagtgcttcaagtaatgacgaaaatactaataataatgttat |
44884074 |
T |
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| Q |
201 |
caaggagcatttgattgatgttgattattcagtgcctgtggaggaggaggaggagaa |
257 |
Q |
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| T |
44884073 |
caaggagcatttgattgatgttgattattcagtgcctgtggaggaggaggaggagaa |
44884017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 8994225 - 8994463
Alignment:
| Q |
1 |
tcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactcagggattctgtctcgtgttg |
100 |
Q |
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|||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
8994225 |
tcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatcagggattctctctcgtgttg |
8994324 |
T |
|
| Q |
101 |
tttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaaatactaataataatgttat |
200 |
Q |
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| T |
8994325 |
tttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaaatac---taataatgttaa |
8994421 |
T |
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| Q |
201 |
caaggagcatttgattgatgttgattattcagtgcctgtgga |
242 |
Q |
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| T |
8994422 |
aaaggagcatttgattgatgttgactattcagttcttgtgga |
8994463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 9028882 - 9029120
Alignment:
| Q |
1 |
tcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactcagggattctgtctcgtgttg |
100 |
Q |
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|||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
9028882 |
tcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatcagggattctctctcgtgttg |
9028981 |
T |
|
| Q |
101 |
tttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaaatactaataataatgttat |
200 |
Q |
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|||| | |||||| || | ||| |||||||||||||||||||| |||||||||||| ||| |||||||| ||||| |||||||| ||||||||||| |
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| T |
9028982 |
tttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaaatac---taataatgttaa |
9029078 |
T |
|
| Q |
201 |
caaggagcatttgattgatgttgattattcagtgcctgtgga |
242 |
Q |
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||||||||||||||||||||||| |||||||| | |||||| |
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| T |
9029079 |
aaaggagcatttgattgatgttgactattcagttcttgtgga |
9029120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 9007176 - 9007229
Alignment:
| Q |
189 |
taataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga |
242 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |
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| T |
9007176 |
taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtgga |
9007229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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