View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_high_3 (Length: 575)
Name: NF19308_high_3
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 17 - 545
Target Start/End: Original strand, 55336933 - 55337457
Alignment:
| Q |
17 |
agttattgattgtagaattggataaatcatggtgtaaattatgtgtcctattgatgacannnnnnncaagcaataatgaaggaactgagtctttgaaggt |
116 |
Q |
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| T |
55336933 |
agttattgattgaagaattggataaatcatggtgtaaattatgtgtcctattgatgacatttttttcaagcaataatgaaggaactgagtctttgaaggt |
55337032 |
T |
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| Q |
117 |
taacccttcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttgggaaatggattgaggcattcacatttcctctttttgaa |
216 |
Q |
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| T |
55337033 |
taacccttcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttgggaaatggattgaggcattcacattacctctttttgaa |
55337132 |
T |
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| Q |
217 |
gacaagaaagaaaaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgctttgtgtttagtgttag |
316 |
Q |
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| T |
55337133 |
gacaagaaagaaaaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgatttgtgtttagtgttag |
55337232 |
T |
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| Q |
317 |
tgaggaaaggtttatatatatactatactattgtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttttaagac-aagagttat |
415 |
Q |
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| T |
55337233 |
tgaggaaaggtttatata-----tatactattgtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttttagtacaaagagttat |
55337327 |
T |
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| Q |
416 |
gggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgtttttagtattaaaaaatg |
515 |
Q |
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| T |
55337328 |
gggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgtttttagtattaaaaaatg |
55337427 |
T |
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| Q |
516 |
aagctaatgagttcatgtcatgtgaaatta |
545 |
Q |
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| T |
55337428 |
aagctaatgagttcatgtcatgtgaaatta |
55337457 |
T |
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