View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_high_7 (Length: 457)
Name: NF19308_high_7
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_high_7 |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: scaffold0288 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 11425 - 11278
Alignment:
| Q |
10 |
gcagagatacatattgaaattgtcaaggatgatgtgttcaatgcatttgataaggcaaatatttcgttggacaatgtgaattgagtgatgtttcttaatt |
109 |
Q |
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| T |
11425 |
gcagagatacatagtgaaattgtcaaggatgatgtgttcaatgcattttataaggtaaatatttcgttggacaatgtgaattgagtgatgtttcttaatt |
11326 |
T |
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| Q |
110 |
catatctttttgtcatctctcttttgaaatcactaaataacacttagcag |
159 |
Q |
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| T |
11325 |
catatcttttttt--tctctcttttgaagtcactaaatagcacttagcag |
11278 |
T |
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