View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_high_9 (Length: 452)
Name: NF19308_high_9
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 49 - 427
Target Start/End: Original strand, 35202593 - 35202971
Alignment:
| Q |
49 |
ccatagttttgatattgcttctacctcaaaccatatcaattctcttctttatggtaactcttcttgtcatgatgtgatgaactttccttttgcaacaagg |
148 |
Q |
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| T |
35202593 |
ccatagttttgatattgcttctacctcaaaccatatcaattctcttctttatggtaactcttcttgtcatgatgtgatgaactttccttttgcaacaagg |
35202692 |
T |
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| Q |
149 |
ttcaattctacaagagtttcaagttcttcttctggttatgatcatcttcagcagcagcagcctcaggtgaatggtcttggattaggtttttcatctgggg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35202693 |
ttcaattctacaagagtttcaagttcttcttctggttatgatcatcttcagcagcagcagcctcaggtgaatggtcttggattaggtttttcatctgggg |
35202792 |
T |
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| Q |
249 |
tagttaatcttaatcatcatgatgattacagaaatgggtttggttcaaataataacaactacagttccatctttggttcttctactacttcaactaatga |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
35202793 |
tagttaatcttaatcatcatgatgattacagaaatgggtttggttcaaataataacaactacagttccatctttggttcttcttctacttcaactaacga |
35202892 |
T |
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| Q |
349 |
taactccatggcctctactactccagttatggcttctctacttaactctacactactgcaacagaaattcatgagtgca |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35202893 |
taactccatggcctctactactccagttatggcttctctacttaactctacactactgcaacagaaattcatgagtgca |
35202971 |
T |
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