View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_low_1 (Length: 690)
Name: NF19308_low_1
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 571
Target Start/End: Complemental strand, 31857912 - 31857343
Alignment:
| Q |
7 |
ggagcagagacactgaggagaagattggactacacttgaaagttgtgtgcaacatgaagttgatggatttgaagaactccccattatgtagtttagacaa |
106 |
Q |
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| T |
31857912 |
ggagcatagacactgaggagaagattggactacacttgaaagttgtgagcaacatgaagatgatggatttgaagaactccccattatgtagtttagacaa |
31857813 |
T |
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| Q |
107 |
gggctcaagctagtgagtgttgatgtacaacctgattgagcttcattttgtgtacacatatttgccactaggaccataactagacacataatatactctt |
206 |
Q |
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| T |
31857812 |
gggctcaagctagtgatcgttgatgtacaacctgattgagcttcattttgagtacacatattggccactaggaccataactagaaataggatataccctt |
31857713 |
T |
|
| Q |
207 |
taaatgccattactccttttatcttagaactaatt----cttatat--atctgttattcttttaaacttatggatgtatgaagttttaatgaaaaggtaa |
300 |
Q |
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| T |
31857712 |
taaatgccattactccttttatcttgaaactgattaactctgatatgtatttgttatttgttgatatttattgatgtttga-gtgttaatgaaaagttaa |
31857614 |
T |
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| Q |
301 |
tgaaggataggttatttatatatactataaaatactcttcaaattgtaagaaaatgacaagtaaa-tgcaggttacctactctttggaattatatgaccc |
399 |
Q |
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| T |
31857613 |
tgaaggctatgttatttatatataccatagaatactcttgaaattctaagaaaatgataagtaaaatgcaggttacctactctttggaattatatgaccc |
31857514 |
T |
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| Q |
400 |
tcttgttgtacatacatatataaataaaaac-tttttcgttgaaagaaagtgtttattgtcaacaatttaattaaattaaaatgtgataataaacggttg |
498 |
Q |
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| T |
31857513 |
tcttgttgtacata--tatataaataaaaacctttttccttgaaaggaagtgcttattgtcaacaatttaattaaattaaaatgtgataataaacggttg |
31857416 |
T |
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| Q |
499 |
cactttgaccccgcaacaataccgccacatcttgtatccttctctaacttcatgtcatcaatttctccttcat |
571 |
Q |
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| T |
31857415 |
cactttgaccccacaacaataccgccacatcttgtatccttcactaacttcaattcatcaatttctccttcat |
31857343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 610 - 673
Target Start/End: Complemental strand, 31856936 - 31856873
Alignment:
| Q |
610 |
tatatgcttcaattcgtcaatgactaaatggagtcatttcaaaatttggtttgtaattacagct |
673 |
Q |
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| T |
31856936 |
tatatgcttcaattcgtcaatgactaaatgtagtcatttcaaaatttggtttataatcacagct |
31856873 |
T |
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