View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_low_11 (Length: 450)
Name: NF19308_low_11
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Original strand, 35733705 - 35734128
Alignment:
| Q |
11 |
cacagacgatgtaggaatttacatgaccaaaaacagtttagaatagtttaggaagatcactttaccaacaacaatatccatctcttcttgacaaatagtt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35733705 |
cacaaacgatgtaggaatttacatgaccaaaaacagtttagaatagtttaggaagatcactttaccaacaacaatatccatctcttcttgaccaatagtt |
35733804 |
T |
|
| Q |
111 |
ccccttaagaaatgaaggattccacaataagataaaacatggacttcgactcttaataaaccaagagcagcttgttcgaaaaataggagatcagcccata |
210 |
Q |
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| T |
35733805 |
ccccttaagaaatgaaggattccacaataagataaaacatggacttcgactcttaataaaccaagagcagcttgttcgaaaaataggagatcagcccata |
35733904 |
T |
|
| Q |
211 |
aactg-aaacaacnnnnnnnttaagttaacatcaataaaacatattgtttttaatggattaaggtcccatttgtgtgtgtttatttgaagaaaaagggaa |
309 |
Q |
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| T |
35733905 |
aactgaaaaaaacaaaaaaattaagttaacatcaataaaacatattgtttttaatggattaaggtcccatttgtgtgtgtttatttgaagaaaaagggaa |
35734004 |
T |
|
| Q |
310 |
actctaaagcccctactcaaaagccaaaacaatgtctgaagaaagctctaaaa-gaaagtgcatcataaagtcattgtttacaaaaaagaattgacatat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35734005 |
actctaaagcccctactcaaaagccaaaacaatgtctgaagaaagctctaaaatgaaagtgcatcataaagtcattgtttacaaaaaagaattgacatat |
35734104 |
T |
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| Q |
409 |
aattgatgaataatgagatcatag |
432 |
Q |
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| T |
35734105 |
aattgatgaataatgagatcatag |
35734128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 338
Target Start/End: Complemental strand, 35760732 - 35760632
Alignment:
| Q |
240 |
atcaataaaacatattgtttttaatggattaaggtcccatttgtgtg--tgtttatttgaagaaaaagggaaactctaaagcccctactcaaaagccaaa |
337 |
Q |
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||||||||||||||| | ||||||||| |||||| ||||||||| | ||||||||||| |||||||||||| || |||| |||||||| |||| ||| |
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| T |
35760732 |
atcaataaaacatatcctatttaatggactaaggttccatttgtgcgagtgtttatttgatgaaaaagggaaattcaaaagttcctactcagaagctaaa |
35760633 |
T |
|
| Q |
338 |
a |
338 |
Q |
| |
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| T |
35760632 |
a |
35760632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 35854623 - 35854655
Alignment:
| Q |
257 |
tttttaatggattaaggtcccatttgtgtgtgt |
289 |
Q |
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| T |
35854623 |
tttttaatggattaaggtctcatttgtgtgtgt |
35854655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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