View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19308_low_14 (Length: 421)

Name: NF19308_low_14
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19308_low_14
NF19308_low_14
[»] chr7 (5 HSPs)
chr7 (16-175)||(39110694-39110853)
chr7 (271-410)||(39110949-39111088)
chr7 (285-368)||(28030975-28031057)
chr7 (309-368)||(32525253-32525312)
chr7 (271-374)||(40417858-40417963)
[»] chr8 (7 HSPs)
chr8 (273-363)||(14707236-14707328)
chr8 (271-368)||(39856122-39856221)
chr8 (285-367)||(7535778-7535861)
chr8 (274-369)||(12734898-12734995)
chr8 (274-369)||(38958438-38958535)
chr8 (316-364)||(25018499-25018547)
chr8 (285-368)||(32752503-32752587)
[»] chr4 (9 HSPs)
chr4 (271-368)||(39654908-39655007)
chr4 (272-315)||(35897786-35897830)
chr4 (271-368)||(42853661-42853760)
chr4 (271-368)||(50831643-50831742)
chr4 (290-363)||(17475981-17476054)
chr4 (271-366)||(21775232-21775329)
chr4 (271-368)||(41849775-41849874)
chr4 (318-362)||(40587101-40587144)
chr4 (303-363)||(52846122-52846182)
[»] chr5 (3 HSPs)
chr5 (271-367)||(6596415-6596512)
chr5 (274-368)||(21943584-21943679)
chr5 (271-364)||(35649881-35649974)
[»] chr1 (5 HSPs)
chr1 (272-370)||(51571232-51571332)
chr1 (272-360)||(25509075-25509165)
chr1 (271-339)||(47721493-47721563)
chr1 (271-339)||(47728485-47728555)
chr1 (303-363)||(50882003-50882063)
[»] chr6 (6 HSPs)
chr6 (271-368)||(4820451-4820550)
chr6 (271-368)||(31883191-31883290)
chr6 (271-365)||(6271434-6271527)
chr6 (290-363)||(3199064-3199137)
chr6 (303-363)||(335179-335239)
chr6 (303-363)||(31749483-31749543)
[»] chr3 (14 HSPs)
chr3 (271-368)||(55361121-55361220)
chr3 (281-367)||(30185619-30185707)
chr3 (322-368)||(4844869-4844915)
chr3 (322-368)||(4859424-4859470)
chr3 (322-368)||(4870565-4870611)
chr3 (322-368)||(4879432-4879478)
chr3 (303-368)||(48176737-48176803)
chr3 (303-360)||(26645144-26645201)
chr3 (303-367)||(34627770-34627835)
chr3 (290-363)||(35201433-35201506)
chr3 (271-366)||(35299764-35299861)
chr3 (303-363)||(3953368-3953428)
chr3 (274-364)||(12762581-12762673)
chr3 (303-363)||(21196242-21196302)
[»] chr2 (5 HSPs)
chr2 (271-368)||(44977387-44977486)
chr2 (274-369)||(39147853-39147950)
chr2 (303-338)||(4023268-4023303)
chr2 (271-368)||(27490618-27490717)
chr2 (316-369)||(30339751-30339804)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 39110694 - 39110853
Alignment:
Q  16 ttttttacatgatgtaactagtattgctggtgttaacaaaataaagtttcatgtaaatgtgtcaaagtttattatgcgagactaactagcaatgaaattt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39110694 ttttttacatgatgtaactagtattgctggtgttaacaaaataaagtttcatgtaaatgtgtcaaagtttattatgcgagactaactagcaatggaattt 39110793  T
Q  116 aaatcctctcgtaactaaatccaatcggaggggtgattctattggtgatttcacccttaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39110794 aaatcctctcgtaactaaatccaatcggaggggtgattctattggtgatttcacccttaa 39110853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 271 - 410
Target Start/End: Original strand, 39110949 - 39111088
Alignment:
Q  271 ctctattgctttgattttttgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacacaactcaa 370  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  39110949 ctctattgctttgattttttgtcaatacttcattttcattgtaaattatgattgtctcataagttgtcattaaaataattgttcaaataacacaactcaa 39111048  T
Q  371 aatatatataagttggcattgatggtatttattggatatt 410  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  39111049 aatatatacaagttggcattaatggtatttattggatatt 39111088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 368
Target Start/End: Original strand, 28030975 - 28031057
Alignment:
Q  285 ttttttgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    |||| ||| ||||| || ||||| |||||||||||||||||| || ||||| || || ||||| |||||||||||| |||||||    
T  28030975 ttttgtgttaatacctcattttctttgtaaattatgattgtccca-aaattatcattcaaatagttgttcaaataaaacaactc 28031057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 32525253 - 32525312
Alignment:
Q  309 ttgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||   ||||||||||||||||| || |||||||| | |||||||||||||||    
T  32525253 ttgtaaattacagttgtctcataaattgtcattgaaataattatccaaataacacaactc 32525312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 374
Target Start/End: Original strand, 40417858 - 40417963
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||||| ||||| ||||||||| ||  |||| ||||||| || || |||||||| || ||||| |  |||||  |||||||||||||||||||    
T  40417858 ctctattgctttggtttttatgtcaatacctcactttctttgtaaaattttggttgtctcaaaagttgtcgtataaatagatgttcaaataacacaactc 40417957  T
Q  369 aaaata 374  Q
    | ||||    
T  40417958 ataata 40417963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 363
Target Start/End: Complemental strand, 14707328 - 14707236
Alignment:
Q  273 ctattgctttgatttt-ttgtcaatactt-cgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 363  Q
    |||||||||||||||| |||||||||| | | ||||| |||||||||||||||||||||||| ||||||   ||||| |||||||||||||||    
T  14707328 ctattgctttgattttcttgtcaatacctactttttctttgtaaattatgattgtctcataagttgtccaccaaatagttgttcaaataacac 14707236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 39856122 - 39856221
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||||||||||| ||||||||  |  ||||| |||| |||| |||||||||| | || || || |||||||| ||||||||||||||||||||    
T  39856122 ctctattgctttgatttttgtgtcaatatctatttttctttgttaattcatgattgtcttaaaagttatcattaaaatagttgttcaaataacacaactc 39856221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 7535778 - 7535861
Alignment:
Q  285 ttttttgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaact 367  Q
    |||| ||| ||||| || ||||| ||||||||| ||||||||| ||||||||||| || |||| ||| || |||||||||||||    
T  7535778 ttttgtgttaatacctcattttctttgtaaatttatgattgtcccataaattgtcattcaaattattatttaaataacacaact 7535861  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 12734995 - 12734898
Alignment:
Q  274 tattgctttgattttt-tgtcaatacttcgttttcattgtaaattatga-ttgtctcataaattgtccttaaaataattgttcaaataacacaactca 369  Q
    |||| ||||||||||| ||||||||| |  ||||||||||||||| | | ||||| |||||||| || |  |||| ||||||||||||||||| ||||    
T  12734995 tattactttgatttttgtgtcaatacctacttttcattgtaaatttttagttgtcacataaattatcatacaaattattgttcaaataacacatctca 12734898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 38958535 - 38958438
Alignment:
Q  274 tattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaactca 369  Q
    |||||||||| ||||| |||  |||| || ||||| ||||||||| ||| ||||  || |||||||| ||||||| |||||||||||||||| |||||    
T  38958535 tattgctttggtttttgtgttcatacctcattttctttgtaaattgatggttgttccaaaaattgtcattaaaatgattgttcaaataacacgactca 38958438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 25018499 - 25018547
Alignment:
Q  316 ttatgattgtctcataaattgtccttaaaataattgttcaaataacaca 364  Q
    |||||||||||  |||||||||| |  ||||||||||||||||||||||    
T  25018499 ttatgattgtcatataaattgtcttacaaataattgttcaaataacaca 25018547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 368
Target Start/End: Original strand, 32752503 - 32752587
Alignment:
Q  285 ttttttgtcaatacttcgttttcattgtaaatta-tgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    |||| ||||||| | || ||||| |||||||| | |||||||| |||||||| || || ||||  ||||||||||||||||||||    
T  32752503 ttttgtgtcaattcctcattttctttgtaaatcaatgattgtcccataaattatcattgaaatggttgttcaaataacacaactc 32752587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 39654908 - 39655007
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||||||||||| ||||||||| || ||||| ||||||||| ||| |||||| | ||||| || |  ||||| ||||||||||||||||||||    
T  39654908 ctctattgctttgatttttgtgtcaatacctcattttctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacacaactc 39655007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 35897786 - 35897830
Alignment:
Q  272 tctattgctttgattttt-tgtcaatacttcgttttcattgtaaa 315  Q
    |||||||||||||||||| |||||||||||| |||||||||||||    
T  35897786 tctattgctttgatttttgtgtcaatacttcattttcattgtaaa 35897830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 42853661 - 42853760
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||||| ||||| ||||||||| || ||||| || |||| || ||||||||||| ||||||||  | ||||   |||||||||||||||||||    
T  42853661 ctctattgctttggtttttgtgtcaatacctcattttctttataaaattttgattgtctcaaaaattgtcactcaaatggatgttcaaataacacaactc 42853760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 368
Target Start/End: Complemental strand, 50831742 - 50831643
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||||||||||| |||||| || || ||||| ||||||| ||||| ||||| || || |||||  | ||||  ||||||||||||||||||||    
T  50831742 ctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactc 50831643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 17475981 - 17476054
Alignment:
Q  290 tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 363  Q
    |||||||||| | ||||| ||||||||||||||||||  |||| |||||   ||| | ||||||||||||||||    
T  17475981 tgtcaatactactttttctttgtaaattatgattgtcaaataagttgtcaccaaattgattgttcaaataacac 17476054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 366
Target Start/End: Complemental strand, 21775329 - 21775232
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaac 366  Q
    ||||||||||||| ||| | |||||||| ||| ||||| || |||||| ||||||||| || |||||||| |  |||||||| ||| |||||||||||    
T  21775329 ctctattgctttggtttctgtgtcaatatttcattttccttataaatttatgattgtcacaaaaattgtcatccaaataattattctaataacacaac 21775232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 41849775 - 41849874
Alignment:
Q  271 ctctattgctttgattttt--tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 367  Q
    ||||||||||||| |||||  |||||||| ||| ||||| ||||||| ||||||||||   | |||||||| |||||||  |||||||||| ||||||||    
T  41849775 ctctattgctttggttttttgtgtcaatatttctttttctttgtaaatttatgattgt-aaaaaaattgtcattaaaatggttgttcaaatcacacaact 41849873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 40587101 - 40587144
Alignment:
Q  318 atgattgtctcataaattgtccttaaaataattgttcaaataaca 362  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||    
T  40587101 atgattgtctcataagttgtc-ttaaaatgattgttcaaataaca 40587144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 52846182 - 52846122
Alignment:
Q  303 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 363  Q
    ||||| ||||||||||||||||||  | ||||||||  | ||||| |||||||||||||||    
T  52846182 ttttctttgtaaattatgattgtcctaaaaattgtcaatcaaatagttgttcaaataacac 52846122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 367
Target Start/End: Original strand, 6596415 - 6596512
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 367  Q
    ||||||||||||| ||||| ||| ||||| || ||||| ||||||||||||||| || ||||||||||  || ||||  | |||||||||||||||||    
T  6596415 ctctattgctttggtttttgtgttaatacctcattttctttgtaaattatgattatcccataaattgtaattgaaatggtcgttcaaataacacaact 6596512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 368
Target Start/End: Complemental strand, 21943679 - 21943584
Alignment:
Q  274 tattgctttgattttt-tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    |||||||||||||||| ||||||||  |  ||||| |||||||||||| |||||   ||| ||||| |||||||| ||||| ||||||||||||||    
T  21943679 tattgctttgatttttctgtcaatatcttattttctttgtaaattatggttgtcatgtaagttgtcattaaaatagttgtttaaataacacaactc 21943584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 35649974 - 35649881
Alignment:
Q  271 ctctattgctttgattttttgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacaca 364  Q
    ||||||||| || ||||| ||||||||  |  ||| | || |||||||||| |||  ||||||||||| || |||| |||||||||||||||||    
T  35649974 ctctattgcattaattttgtgtcaatatcttatttcctttataaattatgactgttccataaattgtcattgaaatgattgttcaaataacaca 35649881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 51571332 - 51571232
Alignment:
Q  272 tctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaactca 369  Q
    |||||||||||| ||||| ||||||||| || ||||| ||||||| ||||| ||||| || ||||||||  | ||||  |||||||||||||||||||||    
T  51571332 tctattgctttggtttttgtgtcaatacctctttttctttgtaaaattatggttgtcccaaaaattgtcaatcaaatggttgttcaaataacacaactca 51571233  T
Q  370 a 370  Q
    |    
T  51571232 a 51571232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 25509165 - 25509075
Alignment:
Q  272 tctattgctttgattttt-tgtcaatacttcgttttcattgtaaatta-tgattgtctcataaattgtccttaaaataattgttcaaataa 360  Q
    ||||||| |||| ||||| ||||||||| || ||||| ||||| || | ||||||||| |||| ||||| ||||||| |||||||||||||    
T  25509165 tctattgttttggtttttgtgtcaatacctcattttctttgtatatcaatgattgtctaataagttgtcattaaaatgattgttcaaataa 25509075  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 47721493 - 47721563
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatactt-cgttttcattgtaaattatgattgtctcataaattgtcc 339  Q
    ||||||||||||||||||  ||||||||||| | ||||| |||||||||||| ||||| ||||| ||||||    
T  47721493 ctctattgctttgattttcgtgtcaatacttactttttctttgtaaattatggttgtcccataagttgtcc 47721563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 47728485 - 47728555
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatactt-cgttttcattgtaaattatgattgtctcataaattgtcc 339  Q
    ||||||||||||||||||  ||||||||||| | ||||| |||||||||||| ||||| ||||| ||||||    
T  47728485 ctctattgctttgattttcgtgtcaatacttactttttctttgtaaattatggttgtcccataagttgtcc 47728555  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 50882063 - 50882003
Alignment:
Q  303 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 363  Q
    ||||| || ||||||||||||||| |||||||||||  | ||||  |||||||||||||||    
T  50882063 ttttctttataaattatgattgtcacataaattgtcaatcaaatggttgttcaaataacac 50882003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 4820451 - 4820550
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||||||||||| ||||||| | || ||||| ||||||| || ||||||||||| || || || |  ||||| ||||||||||||||||||||    
T  4820451 ctctattgctttgatttttgtgtcaatgcctcattttctttgtaaaattttgattgtctcaaaagttatcatgtaaatagttgttcaaataacacaactc 4820550  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 368
Target Start/End: Complemental strand, 31883290 - 31883191
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||||||||||| |||||| || || ||||| ||||||| ||||| ||||| || ||||||||  | ||||| |||||||||||| |||||||    
T  31883290 ctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtcccaaaaattgtcaatcaaatagttgttcaaataatacaactc 31883191  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 365
Target Start/End: Original strand, 6271434 - 6271527
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacacaa 365  Q
    |||||||| |||| ||||| ||||||||  || ||||| |||||||||||||| || ||| || ||||| |||||||  |||||||||||||||||    
T  6271434 ctctattgttttggtttttgtgtcaata--tctttttctttgtaaattatgatcgtatcaaaagttgtcattaaaatggttgttcaaataacacaa 6271527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 3199064 - 3199137
Alignment:
Q  290 tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 363  Q
    |||||||||| | ||||| || |||||||||||||||  ||||||| || | ||| || |||||||||||||||    
T  3199064 tgtcaatactactttttctttataaattatgattgtcaaataaattatcatcaaattagttgttcaaataacac 3199137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 335179 - 335239
Alignment:
Q  303 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 363  Q
    ||||| ||||||||||||||||||  |||| |||||  |||| | ||||||||||||||||    
T  335179 ttttctttgtaaattatgattgtcaaataagttgtcactaaattgattgttcaaataacac 335239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 31749483 - 31749543
Alignment:
Q  303 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 363  Q
    ||||| |||||||||||| ||||||| ||| |||||  | |||| ||||||||||||||||    
T  31749483 ttttctttgtaaattatggttgtctcttaagttgtcaatcaaatgattgttcaaataacac 31749543  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 368
Target Start/End: Complemental strand, 55361220 - 55361121
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaat-tatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||||| ||||| |||||||||||| ||||| ||||||||  ||| ||||| ||||| || || || ||||| |||||||||||| |||||||    
T  55361220 ctctattgctttggtttttgtgtcaatacttcattttctttgtaaatcaatggttgtcacataagttttcattcaaatagttgttcaaataaaacaactc 55361121  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 367
Target Start/End: Original strand, 30185619 - 30185707
Alignment:
Q  281 ttgattttt-tgtcaatacttcgttttcattgtaaatta-tgattgtctcataaattgtccttaaaataattgttcaaataacacaact 367  Q
    ||||||||| ||||||| | || ||||| |||||||| | | |||||||||||||||||| || ||||  |||||||||||||||||||    
T  30185619 ttgatttttgtgtcaattcctcattttctttgtaaatcaataattgtctcataaattgtctttgaaatggttgttcaaataacacaact 30185707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 4844869 - 4844915
Alignment:
Q  322 ttgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||    
T  4844869 ttgtctcataaattatcgttaaaattgttgttcaaataacacaactc 4844915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 4859424 - 4859470
Alignment:
Q  322 ttgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||    
T  4859424 ttgtctcataaattatcgttaaaattgttgttcaaataacacaactc 4859470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 4870565 - 4870611
Alignment:
Q  322 ttgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||    
T  4870565 ttgtctcataaattatcgttaaaattgttgttcaaataacacaactc 4870611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 4879432 - 4879478
Alignment:
Q  322 ttgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||    
T  4879432 ttgtctcataaattatcgttaaaattgttgttcaaataacacaactc 4879478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 48176803 - 48176737
Alignment:
Q  303 ttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    |||| |||||||||| ||||||||| |||||||| |  |  ||||||||||||||||||||||||||    
T  48176803 tttttattgtaaatttatgattgtcgcataaattattatccaaataattgttcaaataacacaactc 48176737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 26645144 - 26645201
Alignment:
Q  303 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataa 360  Q
    ||||| ||||||||||||||| || ||||||||||| |  ||||| ||||||||||||    
T  26645144 ttttctttgtaaattatgattatcccataaattgtcatccaaatagttgttcaaataa 26645201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 34627835 - 34627770
Alignment:
Q  303 ttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaact 367  Q
    ||||| ||||||||| ||| |||||| |||| || || | ||||||||||||||||||||||||||    
T  34627835 ttttctttgtaaatttatggttgtcttataagttatcataaaaataattgttcaaataacacaact 34627770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 35201506 - 35201433
Alignment:
Q  290 tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 363  Q
    |||||||||| | ||||| ||||||||||||||||||  |||| |||||   ||| | ||||||||||||||||    
T  35201506 tgtcaatactactttttctttgtaaattatgattgtcaaataagttgtcaccaaattgattgttcaaataacac 35201433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 366
Target Start/End: Complemental strand, 35299861 - 35299764
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaac 366  Q
    ||||||||||||||||||| ||||||||| || ||||| || |||||| ||  |||||  | |||||||| |||||||  ||||| ||||||||||||    
T  35299861 ctctattgctttgatttttgtgtcaatacctcattttctttataaattcattgttgtcctaaaaattgtcattaaaatgcttgttgaaataacacaac 35299764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 3953428 - 3953368
Alignment:
Q  303 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 363  Q
    ||||| || |||||||||||||||||| ||||||||    |||| ||||||||||||||||    
T  3953428 ttttctttataaattatgattgtctcaaaaattgtcaaccaaatgattgttcaaataacac 3953368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 12762673 - 12762581
Alignment:
Q  274 tattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacaca 364  Q
    |||| ||||||||||| ||||||||  |  ||||| ||||||||| ||| ||||| ||||||||||| |  |||| |||||||||||||||||    
T  12762673 tattactttgatttttgtgtcaataactatttttctttgtaaatttatggttgtcccataaattgtcatgtaaatgattgttcaaataacaca 12762581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 21196242 - 21196302
Alignment:
Q  303 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 363  Q
    ||||| ||||||||||||||| || |||||||||||  | ||||  |||||||||||||||    
T  21196242 ttttctttgtaaattatgattatcccataaattgtcaatcaaatggttgttcaaataacac 21196302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 368
Target Start/End: Complemental strand, 44977486 - 44977387
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||||| ||||| |||||||||  | ||||| ||||||||| ||| ||||||||||| || || || ||||  ||||||||||||||||||||    
T  44977486 ctctattgctttggtttttgtgtcaataccccattttctttgtaaatttatggttgtctcataagttttcgttcaaatggttgttcaaataacacaactc 44977387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 39147853 - 39147950
Alignment:
Q  274 tattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaactca 369  Q
    ||||| |||||||||| ||||||||| || ||||  ||||||||| ||||||||| || || ||||| |||||||  |||||||||||||||| ||||    
T  39147853 tattgttttgatttttgtgtcaatacctcattttttttgtaaatttatgattgtcccaaaagttgtcattaaaatggttgttcaaataacacatctca 39147950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 338
Target Start/End: Complemental strand, 4023303 - 4023268
Alignment:
Q  303 ttttcattgtaaattatgattgtctcataaattgtc 338  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4023303 ttttctttgtaaattatgattgtctcataaattgtc 4023268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 368
Target Start/End: Complemental strand, 27490717 - 27490618
Alignment:
Q  271 ctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 368  Q
    ||||||||||||||||||| ||| ||||| || ||||| ||||||| || |||||||| || || ||||| | |||||   |||||||||||||||||||    
T  27490717 ctctattgctttgatttttgtgttaatacatcattttctttgtaaaattttgattgtcacaaaagttgtcatcaaaatggatgttcaaataacacaactc 27490618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 30339804 - 30339751
Alignment:
Q  316 ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaactca 369  Q
    ||||||||||||||||| || || || ||||  |||||||||||||||||||||    
T  30339804 ttatgattgtctcataagttctcatttaaatggttgttcaaataacacaactca 30339751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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