View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_low_16 (Length: 379)
Name: NF19308_low_16
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 67 - 362
Target Start/End: Complemental strand, 40281927 - 40281634
Alignment:
| Q |
67 |
aatgaagatgcttgtaatgtgaagaaaaaggaaaggaagttgaactcacacatattgcaggagacagaaagaatgaattgtctgtgtcnnnnnnnn-gaa |
165 |
Q |
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| T |
40281927 |
aatgaagatacttgtaatgtgaagaaaaaggaaaggaagttgaactcacacatattgcaggagacagaaagaatgaattgtctgtgtcaaaaaaaaagaa |
40281828 |
T |
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| Q |
166 |
agaatgaattgtatgagtgaagtttgaataattgtcttttagcttcaaa-ccagaaagtcaacaacaaagggttggagatagagcagtagacaaggtgtt |
264 |
Q |
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| T |
40281827 |
agaatgaattgtatgagtgaagtttgaataattgtcttttagcttcaaaaccagaaagtcaacaacaaagggttggagatagagcagtagacaaggtgtt |
40281728 |
T |
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| Q |
265 |
gtcaagtgtgatggtgaaccatagtttacccatctatctatatataattgtaggctctcttgacaagaagagagagagattaatatatagatagtagt |
362 |
Q |
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| T |
40281727 |
gtcaagtgtgatggtgaaccatagtttacccatctatctatatataattgtaggctctcttgacaagaaga----gagattaatatatagatagtagt |
40281634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40282074 - 40282012
Alignment:
| Q |
1 |
aaattttcactttaaactttataactagagtgtcgttgtgacccttgtcaattagcatttgct |
63 |
Q |
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| T |
40282074 |
aaattttcactttaaactttttaactagagtgtcgttgtgacctttgttaattagcatttgct |
40282012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 40332685 - 40332623
Alignment:
| Q |
176 |
gtatgagtgaagtttgaat----aattgtcttttagcttcaaaccagaaagtcaacaacaaag |
234 |
Q |
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| T |
40332685 |
gtatgagtgaagtttgaatgaggaattgtgtattagcttcaaagcagaaagtcaactacaaag |
40332623 |
T |
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