View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_low_2 (Length: 620)
Name: NF19308_low_2
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 19062592 - 19062161
Alignment:
| Q |
9 |
ataatactacaaagaaaactgatttgttataacttataattaagctggcacactgatttgttagaattatgtaggccagaggagaagtttctttttgata |
108 |
Q |
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| T |
19062592 |
ataatactacaaagaacactgatttgttataact-ataattaagctggcacactgatttgttagaattatgtgggccagaggagaaggttctttttgata |
19062494 |
T |
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| Q |
109 |
atacataagtaattgatgttttcaaattgtttgctctaattaaaatttgtaaaagcaaactttataatactattaaatttgtactttagtaaacttttcc |
208 |
Q |
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| T |
19062493 |
atacat--gtaattgatgttttcaaattgtttgctctaattaaaatttgtaaaagcaaactttataatactattaaatttatactttattaaacttttcc |
19062396 |
T |
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| Q |
209 |
agcgattctagtaacctgatttattttaaagatgaatccactatcattttactatcaattgtc-tttacatagattctttaaagtcacattttactaaaa |
307 |
Q |
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| T |
19062395 |
agcgattctagtaacctgatttattttaaagatgaatccactatcattttactatcaattgtcttttacattgattctttaaagtcacattttactaaaa |
19062296 |
T |
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| Q |
308 |
tgtttgaagttcgaggatggatttgagatatataaaatnnnnnnntaaacgtgaggttaaggttgcaagagaataaaatttgaaaatttaaatctgaatt |
407 |
Q |
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| T |
19062295 |
tgtttgaagttcgaggatggatttgagatata-aaataaaaaaaataaacgtgaggttaaggttgcaagagaataaaatttgaaaatttaaatctgaatt |
19062197 |
T |
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| Q |
408 |
ttaagtgaaataatgttatcaacaatttagtaaatt |
443 |
Q |
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| T |
19062196 |
ttaagtgaaataatgttatcaacaatttagtaaatt |
19062161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 470 - 604
Target Start/End: Complemental strand, 19062163 - 19062018
Alignment:
| Q |
470 |
attagaatttgaaagttaattgtaaaacttagaggaatcaaagcacaatctttt-----------gtgtagatgatgaaccatctgcagtacgataaatc |
558 |
Q |
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| T |
19062163 |
attagaatttgaaagttaattgtaaaacttagaggaatcaaagcacaatcattttagtcgatgatgtgcagatgatgaaccaactgcagtacgataaatc |
19062064 |
T |
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| Q |
559 |
tatataacaaagtaaacaaaaacaaatggtgaaagggggcaataac |
604 |
Q |
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| T |
19062063 |
tatataacaaagtaaacaaaaacaaatggagaaagggggcaataac |
19062018 |
T |
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