View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_low_20 (Length: 342)
Name: NF19308_low_20
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 33581608 - 33581281
Alignment:
| Q |
1 |
taactaaccataactgccacgctttttaactgaggtctgcta---ctg-agagctatagattgtaaatgatagttgtatgctccagtgtgtgtgt----- |
91 |
Q |
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| T |
33581608 |
taactaaccataactgccacgctttttaactgaggtctgctagcacagtagagctatagattgtaaatgatagttgtatgctctagtgtgtgtgtgtgtg |
33581509 |
T |
|
| Q |
92 |
-------aaaaacagtagtaaattgtaactttcacaccaagtgtaaactgtaaaggaaatgtttgccgtttttgttttaccatatcttataccatttatg |
184 |
Q |
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| T |
33581508 |
tgtgtgtaaaaacagtagtaaattgtaactttcacaccaagtgtaaactgtaaaggaaatgtttgccgtttttgttttaccatatcttataccatttatg |
33581409 |
T |
|
| Q |
185 |
cttttccctcttttcacatatttgtaccattggtctcatactactaaatatcaaaacatgtata----cctatacagctatacctacatttcctgcctga |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33581408 |
cttttccctcttttcacatatttgtaccattggtctcatactactaaatatcaaaacatgtatacctacctatacagctatacctacatttcctgcctga |
33581309 |
T |
|
| Q |
281 |
aaatcatcttttacttttttcacatgag |
308 |
Q |
| |
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|||||| |||||||||||| |||||||| |
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| T |
33581308 |
aaatcaccttttactttttccacatgag |
33581281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 32356774 - 32356694
Alignment:
| Q |
245 |
tatacctatacagctatacctacatttcctgcctgaaaatcatcttttacttttttcacatgagtattcatgtctgataat |
325 |
Q |
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| T |
32356774 |
tatacctatacagctttacctacattttcagcttgaaaatcaccttttactttttccacatgagtattcgtgtctgataat |
32356694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 17970013 - 17969902
Alignment:
| Q |
104 |
aaattgtaactttcacacca-agtgtaaactgtaaaggaaatgtttgccgtttttgttttaccat----atcttataccatttatgcttttccctctttt |
198 |
Q |
| |
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||||||||||||| ||||| |||| ||| |||||||| ||||||||| |||||| |||| | | |||||||| ||||||||||||||||||||| |
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| T |
17970013 |
aaattgtaacttttacacccgagtgaaaattgtaaaggtaatgtttgctgtttttttttttctcttaaaatcttatataatttatgcttttccctctttt |
17969914 |
T |
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| Q |
199 |
cacatatttgta |
210 |
Q |
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|||| ||||||| |
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| T |
17969913 |
cacacatttgta |
17969902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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