View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19308_low_22 (Length: 320)

Name: NF19308_low_22
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19308_low_22
NF19308_low_22
[»] chr1 (1 HSPs)
chr1 (7-320)||(6945724-6946037)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 6946037 - 6945724
Alignment:
Q  7 tgaccaacaatcaactatttcaccaaaggattaaactccacagatcacctgacccaccaaacctcacaatgcaaaggaaaaacagttaaccgttagcaaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  6946037 tgaccaacaatcaactatttcaccaaaggattaaactccacagatcacctgacccaccaaacctcacaatgcaaaggaaaaacagttaactgttagcgaa 6945938  T
Q  107 tcaaaagacgaaataccccaatctgctgccattaaagaaaactaaaatgagacctccaagacaactaatacagaaacagtgagacaaaacaccaatgcat 206  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6945937 tcaaaagacaaaataccccaatctgctgccattaaagaaaactaaaatgagacctccaagacaactaatacagaaacagtgagacaaaacaccaatgcat 6945838  T
Q  207 caatctggtctgaaacttcaggtcactatatcgcccatacacaccgtcggattcacacaccattgattaatgttgtaacctgtgctctttgattcatgca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6945837 caatctggtctgaaacttcaggtcactatatcgcccatacacaccctcggattcacacaccattgattaatgttgtaacctgtgctctttgattcatgca 6945738  T
Q  307 aatctggttcattt 320  Q
    ||||||||||||||    
T  6945737 aatctggttcattt 6945724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University