View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_low_31 (Length: 265)
Name: NF19308_low_31
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 265488 - 265728
Alignment:
| Q |
11 |
cagagagatatacaacaatgttagcaggaaggtcctcaactcagacacttacaaggctgaactatctgtcaacagggtcagtcttgtcaacaatggcaac |
110 |
Q |
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| T |
265488 |
cagagagatatacaacaatgttagcaggaaggtcctcaactcagacacttacaaggctgaactatctgtcaacagggtcagtcttgtcaacaatggcaac |
265587 |
T |
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| Q |
111 |
tctacatccaagcaaagcaaaggctatttttcttgctgttcctgaatttggtttttattggttttgatgaattaaaattgaattgggttggctttttctt |
210 |
Q |
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| T |
265588 |
tctacatccaagcaaagcaaaggctatttttcttgctgttcctgaatttggtttttattggttttgatgaattaaaattgaattgggttggctttttctt |
265687 |
T |
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| Q |
211 |
gcatggaatatctttgaatagtttttggattacattacaac |
251 |
Q |
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| T |
265688 |
gcatggaatatctttgaatagtttttggattacattacaac |
265728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 279238 - 279366
Alignment:
| Q |
99 |
aacaatggcaactctacatccaagcaaagcaaaggctatttttcttgctgttcctgaatttggtttttattg--gttttgatgaattaaaattgaattgg |
196 |
Q |
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| T |
279238 |
aacaatagcaacactgcatccaagcaaaaccatagctacttttcttgctgttcctgaatttgattttttttgttggtttggttaattaaaattcaattgg |
279337 |
T |
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| Q |
197 |
gttggctttttcttgcatggaatatcttt |
225 |
Q |
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| T |
279338 |
cttggctccttctttcatgaaatatcttt |
279366 |
T |
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