View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_low_5 (Length: 546)
Name: NF19308_low_5
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 16 - 530
Target Start/End: Complemental strand, 2552186 - 2551672
Alignment:
| Q |
16 |
acaaaacaggtaaatttaactaggaagcaatttatcattacctgaataatgttcagtgatatggtgagtttcaacatcattaaggttttttagtttctca |
115 |
Q |
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| T |
2552186 |
acaaaacaggtaaatttaactaggaagcaatttatcattacctgaataatgttcagtgatatggtgagtttcaacatcattaaggtttttcagtttctca |
2552087 |
T |
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| Q |
116 |
ccacacttgtgacatatcaaaattgaaggaccatcatcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattatattcaacag |
215 |
Q |
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| T |
2552086 |
ccacacttgtgacatatcaaaattgaaggaccatcatcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattataatcaacag |
2551987 |
T |
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| Q |
216 |
gattggttaaccatgaagatgtagatgcgcttctagttgttcgaaaagaaccttcgaaatccttacgtccactcgaacaaatttgacctattgagctatc |
315 |
Q |
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| T |
2551986 |
gattggttaaccatgaagatgtagatgcgcttctagttgttcgaaaagaaccttcgaaatccttacgtccactcgaacaaatttgacctattgagctatc |
2551887 |
T |
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| Q |
316 |
atgaagaatttcatggattataggatcacttatttcaatgctcccttcagattcttgatacaaacttgatgaatttgttaagaacctcttgcttccttgg |
415 |
Q |
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| T |
2551886 |
atgaagaatttcatggattataggatcacttatttcaatgctcccttcagattcttgatacaaacttgatgaatttgttaagaacctcttgcttccttgg |
2551787 |
T |
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| Q |
416 |
atgatatttgaatgatcgagtaaacccgactttgttctctgattattcttacctttttggtgcttaattgtctttggatcataaacatgttttttgttgg |
515 |
Q |
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| T |
2551786 |
atgatatttgaatgatcgagtaaacccgactttgttctctgattattcttacctttttggtgcttaattgtctttggatcataaacatgttttttgttgg |
2551687 |
T |
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| Q |
516 |
gtttgcattgaagct |
530 |
Q |
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| T |
2551686 |
gtttgcattgaagct |
2551672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 63 - 232
Target Start/End: Complemental strand, 2562935 - 2562760
Alignment:
| Q |
63 |
aatgttcagtgatatggtgagtttcaacatcattaaggttttttagtttctcaccacacttgtgacatatcaaaattgaaggacca---tcatcagaatc |
159 |
Q |
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|||| |||||||||||||| | ||||||| || |||||||||||||||||||||| || |||| ||||||||| |||||||||| | || |||||||| |
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| T |
2562935 |
aatgctcagtgatatggtgtgcttcaacagcagtaaggttttttagtttctcaccgcatttgtaacatatcaatattgaaggacaacagtcctcagaatc |
2562836 |
T |
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| Q |
160 |
catctgaaccaacaaccttgttcgagatgagacattttcttcattata---ttcaacaggattggttaaccatgaa |
232 |
Q |
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| T |
2562835 |
catctcaaccaacaaccttgttctagatgagacattttcctcatcataatcatcaacatgattggttaaccttgaa |
2562760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 2562663 - 2562599
Alignment:
| Q |
466 |
acctttttggtgcttaattgtctttggatcataaacatgttttttgttg-ggtttgcattgaagct |
530 |
Q |
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| T |
2562663 |
acctttttggtgcctaaatgtctttggatcatgaacttg-ttttggttgtggtttgcattgaagct |
2562599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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