View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19308_low_6 (Length: 475)
Name: NF19308_low_6
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 218 - 456
Target Start/End: Original strand, 3606850 - 3607091
Alignment:
| Q |
218 |
tcgattagaagagtgatagggcaagtattaaatatattggacaatatgcgatgaaacttggccaaattcgtctgtacgtagataaaagcacaagaaagag |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
3606850 |
tcgattagaagagtgatagagcaagtattatatatattgggcaacatgtgatgaaacttggccaaattcatctgtacgtagataaaaacacaagaaagag |
3606949 |
T |
|
| Q |
318 |
gtaagaggggttgaattgtgtt-gtaaactttttcgacaaaagcaactaag-aatttcttttaaaaaatacct-aaaatgaatgaacacaaacataaaat |
414 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3606950 |
gtaagaggggttgaattgtgttagtaaactttttcgacaaaagcaactaagaaattccttttaaaaaatacctaaaaatgaatgaacacaaacataaaat |
3607049 |
T |
|
| Q |
415 |
agtttaaggaaaaggaagatttacacacagcagccacatccg |
456 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3607050 |
agtttaaggaaaaggaagatctacacacagcagccacatccg |
3607091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 3606620 - 3606692
Alignment:
| Q |
10 |
aagaatatgaggagttcagaaactgctagagtgggagtctttggacatttgggtgacaaattaagcctttgtg |
82 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3606620 |
aagaaaatgaggagttcagaaactgccagagtgggagtctttggacatttgggtgacaaattaagcctttgtg |
3606692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University