View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19308_low_9 (Length: 453)
Name: NF19308_low_9
Description: NF19308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19308_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 41121872 - 41121435
Alignment:
| Q |
1 |
aacaacaaaatggcataaccaacttcattgaactggtacatcagaagacaaaaatctttatagctttgaaggaagaatattaaattttagaaatcaagtt |
100 |
Q |
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| T |
41121872 |
aacaacaaaatggcataaccaacttcattgaactggtacatcagaagacaaaaatctttatagctttgaaggaagaatattaaattttggaaatcaagtt |
41121773 |
T |
|
| Q |
101 |
cacatgtcagcaatgttgcaaagcaaagagagaatctaaattcacatgtcagcaatcaagtttggaaatgctactacattaaacaagtgcacataataga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41121772 |
cacatgtcagcaatgttgcaaagcaaagagagaatctaaattcacatgtcagcaatcaagtttggaaatgctactacattaaacaagtgcacataataga |
41121673 |
T |
|
| Q |
201 |
catgtactagtactatgaacaacaaatatcaaagtgttaacacttaacagatcttaacatatcagcaatgataaatattggtttacttgtaattcatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41121672 |
catgtactagtactatgaacaacaaatatcaaagtgttcacacttaacagatcttaacatatcagcaatgataaatattggtttacttgtaattcatctt |
41121573 |
T |
|
| Q |
301 |
aacagatcaagtttgtgtccagttcatttaatttataataattgtaaatgaaaatgttaatttataataacagatcaagtttgtgttcagcgatgaaaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41121572 |
aacagatcaagtttgtgtccagttcatttaatttataataattgtaaatgaaaatgttaatttataataacagatcaagtttgtgttcagcaatgaaaat |
41121473 |
T |
|
| Q |
401 |
gttggtttactatatttcagtttttatattgtcttttg |
438 |
Q |
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| T |
41121472 |
gttggtttactatatttcagtttttatattgtcttttg |
41121435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 8047540 - 8047423
Alignment:
| Q |
283 |
ttacttgtaattcatcttaacagatcaagtttgtgtccagttcatttaatttataataattgtaaatgaaaatgttaatttataataacagatcaagttt |
382 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
8047540 |
ttacatgtaattcatcttaacagatcaagtttttgtccagttcatttaatttataataacggtaaatgaaaatgttaatttataataacagatcaagtct |
8047441 |
T |
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| Q |
383 |
gtgttcagcgatgaaaat |
400 |
Q |
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||||||||| |||||||| |
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| T |
8047440 |
gtgttcagcaatgaaaat |
8047423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 54039728 - 54039766
Alignment:
| Q |
156 |
tcaagtttggaaatgctactacattaaacaagtgcacat |
194 |
Q |
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| T |
54039728 |
tcaagtttggaaatgctactacaagaaacaagtgcacat |
54039766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 36258941 - 36258971
Alignment:
| Q |
227 |
tatcaaagtgttaacacttaacagatcttaa |
257 |
Q |
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| T |
36258941 |
tatcaaagtgttaacacttaacagatcttaa |
36258971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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