View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19309_high_3 (Length: 320)
Name: NF19309_high_3
Description: NF19309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19309_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 9700129 - 9700434
Alignment:
| Q |
1 |
agctcaaataagttaatccaaacaggcccttactcaagcatgtgatgggaattatatcattttttcacgccgcattgttatttttatatttttcaggcaa |
100 |
Q |
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| T |
9700129 |
agctcaaataagttaatccaaacaggcccttactcaagcatgtgatgggaattatatcattttttcacgccgcattgttatttttatatttttcaggcaa |
9700228 |
T |
|
| Q |
101 |
ctggaaacgtgcttatgcagctgttaagcattttgttgaatgcctgatttctaattatgatcctaaaaagagacagatcaccaaaaggaatggtcttcca |
200 |
Q |
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| T |
9700229 |
ctggaaacgtgcttatgcagctgttaagcattttgttgaatgcctgatttctaattatgatcctaaaaagagacagatcaccagaaggaatggtcttcca |
9700328 |
T |
|
| Q |
201 |
agtatcatattgtcagattatttagaaggccgtatgccaaaaagttcgcaagataagggatttaattggagtggggatgttgcgtcaatcacttcatttt |
300 |
Q |
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| T |
9700329 |
agtatcatattgtcagattatttagaaggccgtatgccaaaaagttcgcaagataagggatttaattggagtggggatgttgcgtcaatcacttcatttt |
9700428 |
T |
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| Q |
301 |
cacagg |
306 |
Q |
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|||||| |
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| T |
9700429 |
cacagg |
9700434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 27493065 - 27493095
Alignment:
| Q |
1 |
agctcaaataagttaatccaaacaggccctt |
31 |
Q |
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| T |
27493065 |
agctcaaataagttaatccaaacaggccctt |
27493095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 41512769 - 41512798
Alignment:
| Q |
3 |
ctcaaataagttaatccaaacaggccctta |
32 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41512769 |
ctcaaataagttaatccaaacaggccctta |
41512798 |
T |
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