View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19309_low_1 (Length: 602)
Name: NF19309_low_1
Description: NF19309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19309_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 35035733 - 35035132
Alignment:
| Q |
1 |
aattctttgccactctaaatgattgaatgtttaataaacc------aaaactcaagggcatcaaactacccagctatagtaggtaaaaatggatgatggt |
94 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35035733 |
aattctttgccactctaaatgattgaatgtttaatacatactcattaaaactctagggcatcaaactaaccagctatagtaggtaaaaatggatgatggt |
35035634 |
T |
|
| Q |
95 |
tcagtgctggaccttaaatatcagatatactaagacaaaactccatacaaatta----ttataggaaaagacaaaagtctatacaaattattatnnnnnn |
190 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35035633 |
tcagtgttggaccttaaatatcagatatactaagacaaaactccatacaaattaattattataggaaaagacaaaagtctatacaaattattataaaaat |
35035534 |
T |
|
| Q |
191 |
nnnnnnnn-gacatttaaataaacacatgatagccacataaagtgtagcattacccacacggaaattattctttaaatacacac----tcttgcattgga |
285 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35035533 |
aaataaaaagacatttaaataaacacatgatagccacataaagtgtagcattacccacacggaaattattctttaaatacacacacactcttgcattgga |
35035434 |
T |
|
| Q |
286 |
aatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaa |
385 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
35035433 |
aatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacacttcatttcaaaaatttgcttgtctaa |
35035334 |
T |
|
| Q |
386 |
ccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttcctt |
485 |
Q |
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|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035333 |
ccaaatcattttttttcttaggaatatgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttcctt |
35035234 |
T |
|
| Q |
486 |
ttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcagccaccacagtttca |
585 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35035233 |
ttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcatccaccacagtttca |
35035134 |
T |
|
| Q |
586 |
ag |
587 |
Q |
| |
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|| |
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| T |
35035133 |
ag |
35035132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 332 - 587
Target Start/End: Complemental strand, 34974660 - 34974408
Alignment:
| Q |
332 |
tgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcct |
431 |
Q |
| |
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|||||||||| |||| |||||||| ||| ||| ||||| | |||| |||| |||||||||| ||||||| ||||||||||||||||||||| |
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| T |
34974660 |
tgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagcatgtttttgtcgcttcatcct |
34974561 |
T |
|
| Q |
432 |
cctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaaca |
531 |
Q |
| |
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|||||||||||| |||||||| ||||||||| ||||||||| ||| |||| ||| || |||||||||||||||| |||||| |||||| | ||| |
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| T |
34974560 |
cctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaactttgggttttggatttctcaaagttctaaaacctttaggtgaaa-- |
34974463 |
T |
|
| Q |
532 |
tcacctaaaaacttagatttgttcttcacatccgtttcagccaccacagtttcaag |
587 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34974462 |
-cacctaaaaatttagatttgttcttcacatccatttcagccaccacagtttcaag |
34974408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 411 - 587
Target Start/End: Complemental strand, 34956119 - 34955946
Alignment:
| Q |
411 |
atgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
510 |
Q |
| |
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|||||| | ||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| || ||||| ||| || |||||||||||||||||| |
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| T |
34956119 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct |
34956020 |
T |
|
| Q |
511 |
ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcagccaccacagtttcaag |
587 |
Q |
| |
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||||| || ||| ||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34956019 |
ctaaaacccttaggtcaaa---cacaaaaaaatttagatttgttcttcacatccgtttcatccaccacagtttcaag |
34955946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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