View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19309_low_2 (Length: 533)
Name: NF19309_low_2
Description: NF19309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19309_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 8 - 517
Target Start/End: Original strand, 45514788 - 45515306
Alignment:
| Q |
8 |
catcatcatggacagcaaacaccttcccttcattgcaaattcttatattgcgacaaaatatgtttagcgctagtattccttcacaactatgtcaactcaa |
107 |
Q |
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| T |
45514788 |
catcatcatggacagcaaacaccttcccttcattgcaaattcttatattgcgacaaaatatgtttagcgctagtattccttcacaactatgtcaactcaa |
45514887 |
T |
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| Q |
108 |
atcactccaaattctggacctctctagaaacaaattgcaaggttcaatacctcgatgcataggaaaccttgaaggaatgacattgggaaaatcaacatca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45514888 |
atcactccaaattctggacctctctagaaacaaattgcaaggttcaatacctcgatgcataggaaaccttgaaggaatgacattgggaaaatcaacatca |
45514987 |
T |
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| Q |
208 |
tcatcagttcatatgcagtcatacaatttaatagcagatgctcctcagacatggtcaaatgagtttcttacagatgtcaatgcattacctcctagtactc |
307 |
Q |
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| T |
45514988 |
tcatcagttcatatgcagtcatacaatttaatagcagatgctcctcagacatggtcaaatgagtttcttacagatgtcaatgcattacctcctagtactc |
45515087 |
T |
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| Q |
308 |
cggttgattggcctagtcaatttgtcacggaagtagtgaaaggaacagaacttgagtataccaaaatattggagcttgtggtcaacatggacttgtcaca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45515088 |
cggttgattggcctagtcaatttgtcacggaagtagtgaaaggaacagaacttgagtataccaaaatattggagcttgtggtcaacatggacttgtcaca |
45515187 |
T |
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| Q |
408 |
aaacaatttggttggattcattccaaatgaaa---------tcacagggctgcatggcttgaacttgtcaagaaatcatttgaaaggagagattcctcaa |
498 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45515188 |
aaacaatttggttggattcattccaaatgaaatcacatggctcacaggactgcatggcttgaacttgtcaagaaatcatttgaaaggagagattcctcaa |
45515287 |
T |
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| Q |
499 |
ttgatgggacgcatgaaat |
517 |
Q |
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| T |
45515288 |
ttgatgggacgcatgaaat |
45515306 |
T |
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