View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19309_low_3 (Length: 526)

Name: NF19309_low_3
Description: NF19309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19309_low_3
NF19309_low_3
[»] chr1 (7 HSPs)
chr1 (15-508)||(13110029-13110523)
chr1 (70-508)||(13097594-13098031)
chr1 (242-508)||(13182783-13183049)
chr1 (63-242)||(13182426-13182605)
chr1 (33-73)||(20288030-20288071)
chr1 (27-68)||(21697151-21697192)
chr1 (27-63)||(26932582-26932618)
[»] chr8 (4 HSPs)
chr8 (27-65)||(34608656-34608694)
chr8 (27-71)||(29197290-29197334)
chr8 (27-74)||(29233782-29233830)
chr8 (27-64)||(38701937-38701974)
[»] chr3 (2 HSPs)
chr3 (27-67)||(31577415-31577455)
chr3 (27-64)||(51187965-51188002)
[»] chr6 (1 HSPs)
chr6 (27-62)||(9952192-9952227)
[»] chr2 (4 HSPs)
chr2 (28-63)||(19368595-19368630)
chr2 (45-74)||(15977196-15977225)
chr2 (32-68)||(10857647-10857683)
chr2 (27-59)||(40939098-40939130)
[»] chr7 (3 HSPs)
chr7 (27-64)||(37858330-37858367)
chr7 (27-64)||(45863021-45863058)
chr7 (27-63)||(36203995-36204031)
[»] chr5 (1 HSPs)
chr5 (32-68)||(5187854-5187890)


Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 15 - 508
Target Start/End: Complemental strand, 13110523 - 13110029
Alignment:
Q  15 cataggagactattttaaaaagatatgggtc-aaaagtgcaattaagcctaaaaattaaaagccaatatttttgaatcgattaacgcagtcttcttccac 113  Q
    |||||| |||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  13110523 cataggggactcttttaaaaagatatgggtccaaaagtgcaattaaacctaaaaattaaaagccaatttttttgaattgattaacgcagtcttcttccac 13110424  T
Q  114 taaactgccaccgtcatttatgccattgttgaaatcttttcagataattttttatctagttagcttaataaacacaataacagtttagcaactgaaccat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13110423 taaactgccaccgtcatttatgccattgttgaaatcttttcagataattttttaactagttagcttaataaacacaataacagtttagcaactgaaccat 13110324  T
Q  214 attatggcaatagcaatatgataattagttgtcaacaaactgattaacgtaataattaatagagtaacagctaacaaaatgaaagcgaacgaaccatgat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13110323 attatggcaatagcaatatgataattagttgtcaacaaactgattaacgtaataattaatagagtaacagctaacaaaatgaaagcgaacgaaccatgat 13110224  T
Q  314 gagttaaatcatggttaatatatttactaatttattgaaacaccgttgcataatcgacactccattttccaaataaagaaatcttttaaccactaatcac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13110223 gagttaaatcatggttaatatatttactaatttattgaaacaccgttgcataatcgacactccattttccaaataaagaaatcttttaaccactaatcac 13110124  T
Q  414 tttcagtgttgatttgagttttaatgcaaagcggcatttccataggcgtagcgtaattcggagttagtagttaactgtcattaactagttccttc 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13110123 tttcagtgttgatttgagttttaatgcaaagcggcatttccataggcgtagcgtaattaggagttagtagttaactgtcattaactagttccttc 13110029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 70 - 508
Target Start/End: Complemental strand, 13098031 - 13097594
Alignment:
Q  70 taaaagccaatatttttgaatcgattaacgcagtcttcttccactaaactgccaccgtcatttatgccattgttgaaatcttttcagataattttttatc 169  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13098031 taaaagccaatatttttgaattgattaacgcagtgttcttccactaaactgccaccgtcatttatgccattgttgaaatcttttcagataattttttaac 13097932  T
Q  170 tagttagcttaataaacacaataacagtttagcaactgaaccatattatggcaatagcaatatgataattagttgtcaacaaactgattaacgtaataat 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13097931 tagttagcttaataaacacaataacagtttagcaactgaaccatat-atggcaatagcaatatgataattagttgtcaacaaactgattaacgtaataat 13097833  T
Q  270 taatagagtaacagctaacaaaatgaaagcgaacgaaccatgatgagttaaatcatggttaatatatttactaatttattgaaacaccgttgcataatcg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  13097832 taatagagtaacagctaacaaaatgaaagcgaacgaaccatgatgagttaaatcatggtcaaaatatttactaatttattgaaacaccgttgcataatcg 13097733  T
Q  370 acactccattttccaaataaagaaatcttttaaccactaatcactttcagtgttgatttgagttttaatgcaaagcggcatttccataggcgtagcgtaa 469  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13097732 atactccattttccaaataaagaaatcttttaaccactaatcactttcagtgttgatttgagttttaatacaaagcggcatttccataggcgtagcgtaa 13097633  T
Q  470 ttcggagttagtagttaactgtcattaactagttccttc 508  Q
    || ||||||||||||||||||||||||||||||||||||    
T  13097632 ttaggagttagtagttaactgtcattaactagttccttc 13097594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 242 - 508
Target Start/End: Original strand, 13182783 - 13183049
Alignment:
Q  242 ttgtcaacaaactgattaacgtaataattaatagagtaacagctaacaaaatgaaagcgaacgaaccatgatgagttaaatcatggttaatatatttact 341  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13182783 ttgtcaacaaactgattaacgtaataattaattgagtaacagctaacaaaatgaaagcgaacgaaccatgatgagttaaatcatggttaatatatttact 13182882  T
Q  342 aatttattgaaacaccgttgcataatcgacactccattttccaaataaagaaatcttttaaccactaatcactttcagtgttgatttgagttttaatgca 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13182883 aatttattgaaacaccgttgcataatcgacactccattttccaaataaagaaatcatttaaccactaatcactttcagtgttgatttgagttttaatgca 13182982  T
Q  442 aagcggcatttccataggcgtagcgtaattcggagttagtagttaactgtcattaactagttccttc 508  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13182983 aagcggcatttccatagacgtagcgtaattaggagttagtagttaactgtcattaactagttccttc 13183049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 13182426 - 13182605
Alignment:
Q  63 taaaaattaaaagccaatatttttgaatcgattaacgcagtcttcttccactaaactgccaccgtcatttatgccattgttgaaatcttttcagataatt 162  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||||||    
T  13182426 taaaaattaaaagccaatatttttcaattgattaacgtagtcttcttccactaaactgccaccgacatttatgccactgttgaaagcttttcaaataatt 13182525  T
Q  163 ttttatctagttagcttaataaacacaataacagtttagcaactgaaccatattatggcaatagcaatatgataattagt 242  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13182526 ttttaactagttagcttaataaacacaataacagtttagcaactgaaccatattatggcaatagcaatatgataattagt 13182605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 20288030 - 20288071
Alignment:
Q  33 aaagatatgggtc-aaaagtgcaattaagcctaaaaattaaa 73  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  20288030 aaagatatgggtccaaaagtgcaattaagcctaaatattaaa 20288071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 21697151 - 21697192
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagcctaaaaa 68  Q
    |||| |||||||| ||||||||||||||||| ||||||||||    
T  21697151 ttttgaaaagataggggtcaaaagtgcaattgagcctaaaaa 21697192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 26932618 - 26932582
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagcct 63  Q
    |||| |||||||| |||||||||||||||||||||||    
T  26932618 ttttgaaaagataggggtcaaaagtgcaattaagcct 26932582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 34608656 - 34608694
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagcctaa 65  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34608656 ttttaaaaagatatgggtcaaaagtgcaattaagcctaa 34608694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 29197334 - 29197290
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagcctaaaaatta 71  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||    
T  29197334 ttttgaaaagataggggtcaaaagtgcaattaagcctaaatatta 29197290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 29233782 - 29233830
Alignment:
Q  27 ttttaaaaagatatgggtc-aaaagtgcaattaagcctaaaaattaaaa 74  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||    
T  29233782 ttttaaaaagatagaggtccaaaagtgcaattaagcctaaaaattaaaa 29233830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 38701937 - 38701974
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagccta 64  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  38701937 ttttgaaaagataggggtcaaaagtgcaattaagccta 38701974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 31577455 - 31577415
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagcctaaaa 67  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  31577455 ttttaaaaagataggggtcaaaagtgcaattaaacctaaaa 31577415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 51187965 - 51188002
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagccta 64  Q
    |||||||||||||  |||||||||||||||||||||||    
T  51187965 ttttaaaaagatagaggtcaaaagtgcaattaagccta 51188002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 9952192 - 9952227
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagcc 62  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9952192 ttttaaaaagataggggtcaaaagtgcaattaagcc 9952227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 19368630 - 19368595
Alignment:
Q  28 tttaaaaagatatgggtcaaaagtgcaattaagcct 63  Q
    |||||||||||| |||||||||||||||||||||||    
T  19368630 tttaaaaagataggggtcaaaagtgcaattaagcct 19368595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 15977225 - 15977196
Alignment:
Q  45 caaaagtgcaattaagcctaaaaattaaaa 74  Q
    ||||||||||||||||||||||||||||||    
T  15977225 caaaagtgcaattaagcctaaaaattaaaa 15977196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 10857647 - 10857683
Alignment:
Q  32 aaaagatatgggtcaaaagtgcaattaagcctaaaaa 68  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  10857647 aaaagataggggccaaaagtgcaattaagcctaaaaa 10857683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 40939098 - 40939130
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaa 59  Q
    ||||||||||||| |||||||||||||||||||    
T  40939098 ttttaaaaagataggggtcaaaagtgcaattaa 40939130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 37858330 - 37858367
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagccta 64  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  37858330 ttttgaaaagataggggtcaaaagtgcaattaagccta 37858367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 45863058 - 45863021
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagccta 64  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  45863058 ttttgaaaagataggggtcaaaagtgcaattaagccta 45863021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 36204031 - 36203995
Alignment:
Q  27 ttttaaaaagatatgggtcaaaagtgcaattaagcct 63  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  36204031 ttttagaaagataggggtcaaaagtgcaattaagcct 36203995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 5187854 - 5187890
Alignment:
Q  32 aaaagatatgggtcaaaagtgcaattaagcctaaaaa 68  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  5187854 aaaagataaggggcaaaagtgcaattaagcctaaaaa 5187890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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