View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19309_low_4 (Length: 493)
Name: NF19309_low_4
Description: NF19309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19309_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 14433745 - 14433270
Alignment:
| Q |
1 |
tggaaatgctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgtttgctttgtctcctttagatgtccct |
100 |
Q |
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| T |
14433745 |
tggaaatgctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgttcgctttgtctcctttagatgtccct |
14433646 |
T |
|
| Q |
101 |
gatcaccctatcaatgttgtttctcctactccttattactcggtgatctttctttcttataaacaaaatggtctcgtatacagactaaaaatgtctcgta |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14433645 |
gatcaccctatcaatgttatttctcctactccttattactcggtgatctttctttcttataaacaaaatggtctcgtatacagactaaaaatgtctcgta |
14433546 |
T |
|
| Q |
201 |
tattaaaatatgttttaggtctcatctacaaataaaatttattgggccgaccatgcaaggaaggttaactaacaatgtgtttaattttattttgtaggaa |
300 |
Q |
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| T |
14433545 |
tattaaaatatgttttaggtctcacctacaaataaaatttactgggccgaccatgcaaggaaggttaactaacaatgcgtttaattttattttgtaggaa |
14433446 |
T |
|
| Q |
301 |
tacaaaaatgcaattaatatattgcattcaaggatgtttcaatggggtggtgatgttgctgtgtatgataaaaatgaatcttacatagaggtggtgacct |
400 |
Q |
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| T |
14433445 |
tacaaaaatgcaattaatatattgcattcaaggatgtttcaatggggtggtgatgctgctgtgtatgataaaaatgaatcttacatagaggtggtgactt |
14433346 |
T |
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| Q |
401 |
ccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactctgcagctaaagggaaattgattcatgactt |
476 |
Q |
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| T |
14433345 |
ccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactctgcagctaaagggaaattgattcatgactt |
14433270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 286 - 446
Target Start/End: Complemental strand, 14441791 - 14441631
Alignment:
| Q |
286 |
tttattttgtaggaatacaaaaatgcaattaat-atattgcattcaaggatgtttcaatggggtggtgatgttgctgtgtatgataaaaatgaatcttac |
384 |
Q |
| |
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|||||||||||||||||| || ||| ||| || ||| |||| |||||| | ||||||||||||||||||| |||| |||||||| |||| || ||||| |
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| T |
14441791 |
tttattttgtaggaataccaagatgtgattgatcata-tgcaatcaaggctatttcaatggggtggtgatgctgctttgtatgatgaaaacaaaccttac |
14441693 |
T |
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| Q |
385 |
atagaggtggtgacctccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactc |
446 |
Q |
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| T |
14441692 |
atagaggtagtgacctccccaaacaaccctgatgggactcttcgaacaccagtggtgaactc |
14441631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 14443146 - 14443011
Alignment:
| Q |
17 |
aaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgtttgctttgtctcctttagatgtccctgatcaccctatcaatg |
116 |
Q |
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| T |
14443146 |
aaagataagttcatagtgttaggaaatggctctactcaacttttcaatgctcttttgtatgcactctctccttcagatccctctgatcaacctatcaatg |
14443047 |
T |
|
| Q |
117 |
ttgtttctcctactccttattactcggtgatctttc |
152 |
Q |
| |
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| T |
14443046 |
ttgttgctgctgctccttattactcggtaatctttc |
14443011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 20626885 - 20626818
Alignment:
| Q |
177 |
tatacagactaaaaatgtctcgtatattaaaatatgttttaggtctcatctacaaataaaatttattgg |
245 |
Q |
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| T |
20626885 |
tatacagactaaaaaagcctcatat-ttaaaatttgttttaaagctcgtctacaaataaaatttattgg |
20626818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 32598443 - 32598355
Alignment:
| Q |
157 |
ttataaacaaaatggtctcgtatacagactaaaaatgtctcgtatattaaaatatgttttaggtctcatctacaaataaaatttattgg |
245 |
Q |
| |
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|||||||||||| || || |||| |||||||||||| ||| ||||||||||| |||||||| ||| ||||||||||||||||||||| |
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| T |
32598443 |
ttataaacaaaaaggcttcatatatagactaaaaatgcctcatatattaaaatttgttttagacctcttctacaaataaaatttattgg |
32598355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 23099316 - 23099366
Alignment:
| Q |
199 |
tatattaaaatatgttttaggtctcatctacaaataaaatttattgggccg |
249 |
Q |
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||||||||||| ||||||||| | ||| ||| ||||||||||||||||||| |
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| T |
23099316 |
tatattaaaatttgttttaggacacatatacgaataaaatttattgggccg |
23099366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 21090454 - 21090503
Alignment:
| Q |
201 |
tattaaaatatgttttaggtctcatctacaaataaaatttattgggccga |
250 |
Q |
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||||||||| || ||||| ||||||||||||||||| |||||||||||| |
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| T |
21090454 |
tattaaaatttgatttagacctcatctacaaataaaaattattgggccga |
21090503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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