View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19309_low_5 (Length: 419)
Name: NF19309_low_5
Description: NF19309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19309_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 86 - 411
Target Start/End: Original strand, 34352330 - 34352655
Alignment:
| Q |
86 |
tatagagatagattgaattgaacccttatatgcaaatttatgtgcacatatattaagaccactcccaatgttgtcaattgcaagaaaataaccgtttgtt |
185 |
Q |
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| T |
34352330 |
tatagagatagattgaattgaacccctatatgcaaatttacgtgcgcatatattaagagcacccccaatgttgtcaattgcaagaaaataacagtttgtt |
34352429 |
T |
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| Q |
186 |
taaattatgctgagcaatgatgttatagtcgctatttacacctaaaaataatgatgctataatgctagggaacatttaagttcgacagtaaccgctatgc |
285 |
Q |
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| T |
34352430 |
taaattatgctgagcaatgatgttatagtcgctatttacacctaaaaataatgatgctataatgcaagggaacatttaagttcgacagtaactgctatgc |
34352529 |
T |
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| Q |
286 |
tataacgctatatccgatataacaccattgataccaccaacaacgtttgttccttacaattaactagctgaaattatctactactactattaaaaatatg |
385 |
Q |
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| T |
34352530 |
tataatgctatatccgatataacaccattgataccaccaacaacgtttgttccttacaattaactagctgaaattatctactgctactattaaaaatatg |
34352629 |
T |
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| Q |
386 |
ggatttagatgcatgcactcctgcct |
411 |
Q |
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| T |
34352630 |
ggatttagatgcatgcagtcctgcct |
34352655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 34357692 - 34357845
Alignment:
| Q |
87 |
atagagatagattgaattgaacccttatatgcaaatttatgtgcacatatattaagaccactcccaatgttgtcaattgcaagaaaataaccgtttgttt |
186 |
Q |
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| T |
34357692 |
atagagatagattgaattgaacctttatatgcaaatttatgtggacatatattaatacca--cccggtgttgtcaattgcaagaaaataacagtttgttc |
34357789 |
T |
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| Q |
187 |
aaattatgctgagcaatga---tgttatagtcgctatttacacctaaaaataatga |
239 |
Q |
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| T |
34357790 |
aaattatgctgagcaatgatgttgttatagttgttgtttacacctaaaaataatga |
34357845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 34352263 - 34352292
Alignment:
| Q |
19 |
caaggatcatgctataacctatcctgcaag |
48 |
Q |
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| T |
34352263 |
caaggatcatgctataacctatcctgcaag |
34352292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 34357631 - 34357660
Alignment:
| Q |
19 |
caaggatcatgctataacctatcctgcaag |
48 |
Q |
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| T |
34357631 |
caaggatcatgctataacctatcctgcaag |
34357660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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