View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1930_high_12 (Length: 240)
Name: NF1930_high_12
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1930_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 9393369 - 9393144
Alignment:
| Q |
1 |
attgacaatggtatgatttcataaattaattatgatgatttgcttaagtttcttgcttgtagctttaccgaattttttatgtt-attgtggttttccctg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||||| |
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| T |
9393369 |
attgacaatggtatgatttcataaattaattatgatgatttgcttaagtttcttgcttgtagctttaccgtattttttttgttgattgtggtttgccctg |
9393270 |
T |
|
| Q |
100 |
attgatacagcacatgccataatagaaagtgagacttcaacactttcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaa |
199 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9393269 |
attgatacagcacatgccataatagaaagcgagacttcaacactttcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaa |
9393170 |
T |
|
| Q |
200 |
agtcaacacaaattaaagaatctaat |
225 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
9393169 |
agtcaacacaaattaaagaatctaat |
9393144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31942999 - 31942774
Alignment:
| Q |
1 |
attgacaatggtatgatttcataaattaattatgatgatttgcttaagtttcttgcttgtagctttaccgaattttttatgtt-attgtggttttccctg |
99 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||| ||||| |
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| T |
31942999 |
attgacaatggtatgattttgtaaattaattatgatgatttgcttaagtttcttgcatgtagcttcaccgaattttttatgttgattatggtttgccctg |
31942900 |
T |
|
| Q |
100 |
attgatacagcacatgccataatagaaagtgagacttcaacactttcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaa |
199 |
Q |
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| T |
31942899 |
attgatacagcacctgccataatagaaagcaagacttcaacactttcaagtgaatctgggtccaatgtccatgcaactgataagaaaggggttaaagaaa |
31942800 |
T |
|
| Q |
200 |
agtcaacacaaattaaagaatctaat |
225 |
Q |
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| T |
31942799 |
aatcaactcaaattaaagaatctaat |
31942774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 1341194 - 1340971
Alignment:
| Q |
6 |
caatggtatgatttcataaattaattatgatgatttgcttaagtttcttgcttgtagctttaccgaa---ttttttatgtt-attgtggttttccctgat |
101 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||| | || ||||||||||| |||||||||| ||||||| |
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| T |
1341194 |
caatggtatgatttcataatttaattatgatgatttgtttaagtttcttgcatgtaactttgctaaacttttttttatgttgattgtggtttaccctgat |
1341095 |
T |
|
| Q |
102 |
tgatacagcacatgccataatagaaagtgagacttcaacactttcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaaag |
201 |
Q |
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||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| | |||||||||||| |
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| T |
1341094 |
tgatacatcacctgccaaaatagaaagtgagacttcaacactttcaagtgaatctgggtacaatgtccatgcagctgataaaaatgcggttaaagaaaaa |
1340995 |
T |
|
| Q |
202 |
tcaacacaaattaaagaatctaat |
225 |
Q |
| |
|
|||| ||||||||||||| |||| |
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| T |
1340994 |
tcaagtcaaattaaagaatgtaat |
1340971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 46630295 - 46630136
Alignment:
| Q |
1 |
attgacaatggtatgatttcataaattaattatgatgatttgcttaagtttcttgcttgtagctttaccgaatttttt-atgtt-attgtggttttccct |
98 |
Q |
| |
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||||||||||||||||||||||| | ||||| |||| |||||||||||||||||| |||| |||||||| |||||| ||||| |||||||||| |||| |
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| T |
46630295 |
attgacaatggtatgatttcatatttaaattacgatggtttgcttaagtttcttgcatgtacctttaccggttttttttatgttgattgtggtttgccct |
46630196 |
T |
|
| Q |
99 |
gattgatacagcacatgccataatagaaagtgagacttcaacactttcaagtgaatctgg |
158 |
Q |
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|||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||| |
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| T |
46630195 |
gattgatacagcacctgccagaatagaaagcgagacttcaacactttctagtgaatctgg |
46630136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 5643264 - 5643128
Alignment:
| Q |
1 |
attgacaatggtatgatttcataaattaattatgatgatttgcttaagtttcttgcttgtagctttaccgaa-ttttttatg-ttattgtggttttccct |
98 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||| ||| ||||||||| ||||||||||||||| | |
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| T |
5643264 |
attgacaatggtatgatttcataatttaattatgatgatttctttaagtttcttctatgtaactttactgaatttttttatgtttattgtggttttcctt |
5643165 |
T |
|
| Q |
99 |
gattgatacagcacatgccataatagaaagtgagact |
135 |
Q |
| |
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||||||| ||| || | | | ||||||||| |||||| |
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| T |
5643164 |
gattgattcagaaccttcaaaaatagaaagcgagact |
5643128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 5643122 - 5643060
Alignment:
| Q |
120 |
aatagaaagtgagacttcaacactttcaagtgaatctgggtccaatgtccgtgcaactgataa |
182 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
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|
| T |
5643122 |
aatagaaagtgagacttcaacaatatcaagtgaatctgggtccaatgcatgtgcaactgataa |
5643060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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