View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1930_high_2 (Length: 519)
Name: NF1930_high_2
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1930_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Complemental strand, 7417124 - 7416635
Alignment:
| Q |
19 |
catcatacatctatatttcggctcgaaacccgtcattgtgggcgccaccgtagaactagccaaatcattcctcaaaacccatgatgctactcttgccggc |
118 |
Q |
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| T |
7417124 |
catcatgcatctatatttcggctcgaaacccgtcattgtgggcgccaccgtagaactagccaaatcattcctcaaaacccatgatgctactcttgccggc |
7417025 |
T |
|
| Q |
119 |
cggcccaaattgtcggctggaaaatacacaacatataactattcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtc |
218 |
Q |
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| T |
7417024 |
cggcccaaattgtcggctggaaaatacacaacatataactattcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtc |
7416925 |
T |
|
| Q |
219 |
tattggagttgtttagtgcaaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7416924 |
tattggagttgtttagtgcaaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaa |
7416825 |
T |
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| Q |
319 |
aacaattttggtgaaagaccatctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagtt |
418 |
Q |
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| T |
7416824 |
aacaattttggtgaaagaccatctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagtt |
7416725 |
T |
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| Q |
419 |
atttcccctgatgagtttaagaagatgttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattcat |
508 |
Q |
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| T |
7416724 |
atttcccctgatgagtttaagaagatgttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattcat |
7416635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 110 - 508
Target Start/End: Complemental strand, 7426019 - 7425621
Alignment:
| Q |
110 |
cttgccggccggcccaaattgtcggctggaaaatacacaacatataactattcagacataacttggtctcaatatggtccatattggcgtcaagctcgta |
209 |
Q |
| |
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||||| || ||||||||||| || ||||||||||| || || |||||||| || |||| |||||||| |||||||| |||||||||| |||||||||| |
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| T |
7426019 |
cttgctgggcggcccaaattctccgctggaaaatatactacttataactactccaacattacttggtcccaatatggcccatattggcaacaagctcgta |
7425920 |
T |
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| Q |
210 |
gaatgtgtctattggagttgtttagtgcaaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattc |
309 |
Q |
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| T |
7425919 |
aaatgtgtctgctagaactgtttagtgtaaaacgccttgagtcttatgagtacatgagaaaacaagagttacatgctttcttgcacgaactatttaattc |
7425820 |
T |
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| Q |
310 |
aaaaaacaaaacaattttggtgaaagaccatctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgat |
409 |
Q |
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| T |
7425819 |
aaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataagtcgcatggttttgggcaaaaagtatttggagaagagtgaa |
7425720 |
T |
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| Q |
410 |
aatgcagttatttcccctgatgagtttaagaagatgttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattcat |
508 |
Q |
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||||| ||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| | |||||| |||||||||||||||||||||||||| |
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| T |
7425719 |
aatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgcttaatggggtcctcaatgttggggattttattccttggattcat |
7425621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 137 - 507
Target Start/End: Complemental strand, 7431981 - 7431611
Alignment:
| Q |
137 |
ggaaaatacacaacatataactattcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattggagttgtttagtg |
236 |
Q |
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|||||||||||||| |||||||| || |||| |||||| | ||| |||||||||| | ||||| |||| ||||| || | ||| |||||||||| |
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| T |
7431981 |
ggaaaatacacaacttataactactctaacatcacttggaacccatacggtccatattttcaacaagcccgtaaaatgtttcaaagggaattgtttagtg |
7431882 |
T |
|
| Q |
237 |
caaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaaga |
336 |
Q |
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|||| | ||||||||||| |||||||| |||||| |||| | ||| |||| |||||||||| |||||||||||||| ||||| |||||| |||| || |
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| T |
7431881 |
taaaaagtctcgagtcttatgagtacatgagaaaagaagaattacatatttttctgcataaactcttcaattcaaaaaataaaactattttgttgaagga |
7431782 |
T |
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| Q |
337 |
ccatctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagttt |
436 |
Q |
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||||||||||||||| ||||| ||| ||||||| || |||||| | ||||| || |||||||| |||| ||| |||| ||||||||||||| |||||| |
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| T |
7431781 |
ccatctttcaacttttagtcttaatattataagccgcatggtgttggggaagaaatacttggagaagagtgaaaatgttattatttcccctgaagagttt |
7431682 |
T |
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| Q |
437 |
aagaagatgttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattca |
507 |
Q |
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||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
7431681 |
aaggagatgttggatgagttgtttttgcttaatggggtcttcaatattggggattttattccttggattca |
7431611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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